Gene detail

Detailed information of g6994.t1 in Tripedalia maipoensis

Genomic Location: scaffold_3:42579483...42594841
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01885 all species →	PTS_2-RNA	RNA 2'-phosphotransferase, Tpt1 / KptA family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002745 all species →	Family	Phosphotransferase KptA/Tpt1	Interproscan
IPR042080 all species →	Homologous_superfamily	RNA 2'-phosphotransferase, N-terminal domain	Interproscan
IPR042081 all species →	Homologous_superfamily	RNA 2'-phosphotransferase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12684 all species →	PUTATIVE PHOSPHOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000215 all species →	Molecular Function	tRNA 2'-phosphotransferase activity	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10669	TRPT1, TPT1; 2'-phosphotransferase	EC:2.7.1.160	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.