Gene detail

Detailed information of g700.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_019645918.1, PREDICTED: dihydrolipoyl dehydrogenase, mitochondrial-like [Branchiostoma belcheri]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1N206	Dihydrolipoyl dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=DLD PE=1 SV=2
P09622	Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=DLD PE=1 SV=2
Q60HG3	Dihydrolipoyl dehydrogenase, mitochondrial OS=Macaca fascicularis OX=9541 GN=DLD PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000529 (this species only)
Orthogroup (gene family)	OG0001226 (this species only)
Orthogroup (gene family)	OG0002821 (this species only)
Orthogroup (gene family)	OG0002934 (this species only)
Orthogroup (gene family)	OG0003563 (this species only)
Orthogroup (gene family)	OG0003861 (this species only)
Orthogroup (gene family)	OG0004387 (this species only)
Orthogroup (gene family)	OG0004551 (this species only)
Orthogroup (gene family)	OG0004930 (this species only)
Orthogroup (gene family)	OG0005538 (this species only)
Orthogroup (gene family)	OG0008463 (this species only)
Orthogroup (gene family)	OG0016181 (this species only)
Orthogroup (gene family)	OG0018124 (this species only)
Orthogroup (gene family)	OG0048250 (this species only)
Orthogroup (gene family)	OG0048272 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	UBD\|Other\|Jab_MPN · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06602 all species →	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF02852 all species →	Pyr_redox_dim	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	Domain	Interproscan
PF08969 all species →	USP8_dimer	USP8 dimerisation domain	Domain	Interproscan
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08357 all species →	SEFIR	SEFIR domain	Family	Interproscan
PF14214 all species →	Helitron_like_N	Helitron helicase-like domain at N-terminus	Family	Interproscan
PF21530 all species →	Pif1_2B_dom	DNA helicase Pif1, 2B domain	Domain	Interproscan
PF05970 all species →	PIF1	PIF1-like helicase	Family	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR010569 all species →	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR030564 all species →	Family	Myotubularin family	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR016156 all species →	Homologous_superfamily	FAD/NAD-linked reductase, dimerisation domain superfamily	Interproscan
IPR012999 all species →	Active_site	Pyridine nucleotide-disulphide oxidoreductase, class I, active site	Interproscan
IPR001100 all species →	Family	Pyridine nucleotide-disulphide oxidoreductase, class I	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR050151 all species →	Family	Class-I pyridine nucleotide-disulfide oxidoreductase	Interproscan
IPR004099 all species →	Domain	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	Interproscan
IPR006258 all species →	Family	Dihydrolipoamide dehydrogenase	Interproscan
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan
IPR044098 all species →	Domain	STAMBP/STALP-like, MPN domain	Interproscan
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR015063 all species →	Domain	USP8 dimerisation domain	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR000907 all species →	Family	Lipoxygenase	Interproscan
IPR036226 all species →	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR013819 all species →	Domain	Lipoxygenase, C-terminal	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR013568 all species →	Domain	SEFIR domain	Interproscan
IPR053047 all species →	Family	E3 ubiquitin ligase TRAF3IP2	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025476 all species →	Domain	Helitron helicase-like domain	Interproscan
IPR049163 all species →	Domain	DNA helicase Pif1-like, 2B domain	Interproscan
IPR010285 all species →	Family	DNA helicase Pif1-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR050474 all species →	Family	Helicase Hel308/SKI2	Interproscan
IPR039241 all species →	Family	Ribosomal RNA-processing protein Rrp9-like	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318 all species →	UNCHARACTERIZED	Interproscan
PTHR10807 all species →	MYOTUBULARIN-RELATED	Interproscan
PTHR22912 all species →	DISULFIDE OXIDOREDUCTASE	Interproscan
PTHR12947 all species →	AMSH-LIKE PROTEASE	Interproscan
PTHR11771 all species →	LIPOXYGENASE	Interproscan
PTHR19854 all species →	TRANSDUCIN BETA-LIKE 3	Interproscan
PTHR34257 all species →	ADAPTER PROTEIN CIKS	Interproscan
PTHR45786 all species →	DNA BINDING PROTEIN-LIKE	Interproscan
PTHR47961 all species →	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	Interproscan
PTHR19865 all species →	U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016668 all species →	Molecular Function	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	Interproscan
GO:0004148 all species →	Molecular Function	dihydrolipoyl dehydrogenase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0045252 all species →	Cellular Component	oxoglutarate dehydrogenase complex	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0061578 all species →	Molecular Function	K63-linked deubiquitinase activity	Interproscan
GO:0070536 all species →	Biological Process	protein K63-linked deubiquitination	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0140492 all species →	Molecular Function	metal-dependent deubiquitinase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0034440 all species →	Biological Process	lipid oxidation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000472 all species →	Biological Process	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000480 all species →	Biological Process	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0034511 all species →	Molecular Function	U3 snoRNA binding	Interproscan
GO:0006959 all species →	Biological Process	humoral immune response	Interproscan
GO:0043123 all species →	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0030515 all species →	Molecular Function	snoRNA binding	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00382	DLD, lpd, pdhD; dihydrolipoyl dehydrogenase	EC:1.8.1.4	Exosome	ko04147	deepkoala
K11866	STAMBP, AMSH; STAM-binding protein	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.