Gene detail

Detailed information of g7002.t1 in Acropora digitifera

Genomic Location: chr3Alt:25605433...25610996
NR annotation: XP_029190606.2, 28S ribosomal protein S35, mitochondrial-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2YDF6	Small ribosomal subunit protein mS35 OS=Bos taurus OX=9913 GN=MRPS35 PE=1 SV=1
Q8BJZ4	Small ribosomal subunit protein mS35 OS=Mus musculus OX=10090 GN=Mrps35 PE=1 SV=2
P82673	Small ribosomal subunit protein mS35 OS=Homo sapiens OX=9606 GN=MRPS35 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10213 all species →	MRP-S28	Mitochondrial ribosomal subunit protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019349 all species →	Domain	Small ribosomal subunit protein mS35, mitochondrial, conserved domain	Interproscan
IPR039848 all species →	Family	Small ribosomal subunit protein mS35, mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13490 all species →	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17413	MRPS35; small subunit ribosomal protein S35	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g7002.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

43.8Max TPM

31.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	31.66	43.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	43.81
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	42.34
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	42.33
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	42.01
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	39.02
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	38.54
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	38.48
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	37.24
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	36.68
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	36.23
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	35.56
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	35.43
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	35.24
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	35.15
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	34.03
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	33.00
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	32.91
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	32.53
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	31.83
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	31.25
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	30.72
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	30.66
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	30.53
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	29.86
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	29.29
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	27.54
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	27.36
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	27.26
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	26.47
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	26.35
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	26.32
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	25.66
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	25.44
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	24.59
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	24.49
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	23.79
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	23.04
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	21.96
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	19.71

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.