Gene detail

Detailed information of g702.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_027051742.1, D(2)-like dopamine receptor [Pocillopora damicornis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99758	Phospholipid-transporting ATPase ABCA3 OS=Homo sapiens OX=9606 GN=ABCA3 PE=1 SV=2
Q8R420	Phospholipid-transporting ATPase ABCA3 OS=Mus musculus OX=10090 GN=Abca3 PE=1 SV=3
A0A0G2K1Q8	Phospholipid-transporting ATPase ABCA3 OS=Rattus norvegicus OX=10116 GN=Abca3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000081 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000301 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001037 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001263 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001482 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003394 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003524 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005085 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005169 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007520 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009079 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0012024 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11882 all species →	DUF3402	Domain of unknown function (DUF3402)	Family	Interproscan
PF10176 all species →	DUF2370	Protein of unknown function (DUF2370)	Family	Interproscan
PF15008 all species →	DUF4518	Domain of unknown function (DUF4518)	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF12698 all species →	ABC2_membrane_3	ABC-2 family transporter protein	Family	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038227 all species →	Homologous_superfamily	PCGF Ub-like fold discriminator superfamily	Interproscan
IPR040185 all species →	Family	Far11/STRP	Interproscan
IPR021819 all species →	Domain	Far11/STRP, C-terminal	Interproscan
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR051511 all species →	Family	Mitochondrial Quality Control and Scaffold Kinases	Interproscan
IPR019325 all species →	Family	NEDD4/Bsd2	Interproscan
IPR026698 all species →	Family	Uncharacterised protein C3orf38 (DUF4518)	Interproscan
IPR045162 all species →	Family	Serine/threonine-protein kinase Vps15-like	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR047549 all species →	Domain	BICC1, first type I KH domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR013525 all species →	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR026082 all species →	Family	ABC transporter A	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR050125 all species →	Family	G-protein coupled receptor opsins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13239 all species →	PROTEIN REQUIRED FOR HYPHAL ANASTOMOSIS HAM-2	Interproscan
PTHR33995 all species →	PROTEIN CBG18546	Interproscan
PTHR22972 all species →	SERINE/THREONINE PROTEIN KINASE	Interproscan
PTHR13396 all species →	NEDD4 FAMILY INTERACTING PROTEIN 1/2	Interproscan
PTHR21084 all species →	UNCHARACTERIZED	Interproscan
PTHR17583 all species →	PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4	Interproscan
PTHR10627 all species →	SCP160	Interproscan
PTHR19229 all species →	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan
PTHR24240 all species →	OPSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0031398 all species →	Biological Process	positive regulation of protein ubiquitination	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0050699 all species →	Molecular Function	WW domain binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0016236 all species →	Biological Process	macroautophagy	Interproscan
GO:0030242 all species →	Biological Process	autophagy of peroxisome	Interproscan
GO:0034271 all species →	Cellular Component	phosphatidylinositol 3-kinase complex, class III, type I	Interproscan
GO:0034272 all species →	Cellular Component	phosphatidylinositol 3-kinase complex, class III, type II	Interproscan
GO:0045324 all species →	Biological Process	late endosome to vacuole transport	Interproscan
GO:0071561 all species →	Cellular Component	nucleus-vacuole junction	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005319 all species →	Molecular Function	lipid transporter activity	Interproscan
GO:0006869 all species →	Biological Process	lipid transport	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05643	ABCA3; ATP-binding cassette, subfamily A (ABC1), member 3	-	Transporters	ko02000	deepkoala
K25839	NDFIP; NEDD4 family-interacting protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →