Gene detail

Detailed information of g704.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_028412741.1, cysteine-rich protein 2-binding protein-like [Dendronephthya gigantea]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H8E8	Cysteine-rich protein 2-binding protein OS=Homo sapiens OX=9606 GN=KAT14 PE=1 SV=3
Q8CID0	Cysteine-rich protein 2-binding protein OS=Mus musculus OX=10090 GN=Kat14 PE=1 SV=2
Q9CXG9	PHD finger protein 19 OS=Mus musculus OX=10090 GN=Phf19 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000042 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000249 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001141 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001819 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003651 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004972 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005172 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005360 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005783 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007513 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0030273 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0061995 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan
PF16565 all species →	MIT_C	Phospholipase D-like domain at C-terminus of MIT	Domain	Interproscan
PF04212 all species →	MIT	MIT (microtubule interacting and transport) domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00031 all species →	Cystatin	Cystatin domain	Domain	Interproscan
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF03901 all species →	Glyco_transf_22	Alg9-like mannosyltransferase family	Family	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan
PF06297 all species →	PET	PET Domain	Domain	Interproscan
PF21071 all species →	LARP1_HEAT	LARP1 HEAT repeat region	Repeat	Interproscan
PF05383 all species →	La	La domain	Domain	Interproscan
PF00318 all species →	Ribosomal_S2	Ribosomal protein S2	Family	Interproscan
PF00328 all species →	His_Phos_2	Histidine phosphatase superfamily (branch 2)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR052510 all species →	Family	Oomycete RxLR Effector	Interproscan
IPR032341 all species →	Domain	MITD1, C-terminal phospholipase D-like domain	Interproscan
IPR038113 all species →	Homologous_superfamily	MITD1, C-terminal phospholipase D-like domain superfamily	Interproscan
IPR036181 all species →	Homologous_superfamily	MIT domain superfamily	Interproscan
IPR007330 all species →	Domain	MIT domain	Interproscan
IPR052817 all species →	Family	MIT domain-containing protein 1	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001713 all species →	Family	Proteinase inhibitor I25A, stefin	Interproscan
IPR000010 all species →	Domain	Cystatin domain	Interproscan
IPR046350 all species →	Homologous_superfamily	Cystatin superfamily	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR005599 all species →	Family	GPI mannosyltransferase	Interproscan
IPR010442 all species →	Domain	PET domain	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR047120 all species →	Family	Prickle/Espinas/Testin	Interproscan
IPR045180 all species →	Family	La domain containing protein	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR006607 all species →	Repeat	LARP1-like, DM15 repeat	Interproscan
IPR006630 all species →	Domain	La-type HTH domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR001865 all species →	Family	Small ribosomal subunit protein uS2	Interproscan
IPR018130 all species →	Conserved_site	Small ribosomal subunit protein uS2, conserved site	Interproscan
IPR005706 all species →	Family	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Interproscan
IPR023591 all species →	Homologous_superfamily	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Interproscan
IPR000560 all species →	Family	Histidine phosphatase superfamily, clade-2	Interproscan
IPR029033 all species →	Homologous_superfamily	Histidine phosphatase superfamily	Interproscan
IPR033379 all species →	Active_site	Histidine acid phosphatase active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20916 all species →	CYSTEINE AND GLYCINE-RICH PROTEIN 2 BINDING PROTEIN	Interproscan
PTHR45895 all species →	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR21222 all species →	UNCHARACTERIZED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR11414 all species →	CYSTATIN FAMILY MEMBER	Interproscan
PTHR10127 all species →	DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING	Interproscan
PTHR22760 all species →	GLYCOSYLTRANSFERASE	Interproscan
PTHR24211 all species →	LIM DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR34490 all species →	PROTEIN CBG12054-RELATED	Interproscan
PTHR22792 all species →	LUPUS LA PROTEIN-RELATED	Interproscan
PTHR12534 all species →	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0004866 all species →	Molecular Function	endopeptidase inhibitor activity	Interproscan
GO:0004869 all species →	Molecular Function	cysteine-type endopeptidase inhibitor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0000026 all species →	Molecular Function	alpha-1,2-mannosyltransferase activity	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0045727 all species →	Biological Process	positive regulation of translation	Interproscan
GO:0000339 all species →	Molecular Function	RNA cap binding	Interproscan
GO:0048255 all species →	Biological Process	mRNA stabilization	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02967	RP-S2, MRPS2, rpsB; small subunit ribosomal protein S2	-	Ribosome	ko03011	deepkoala
K10256	FAD2; omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase)	EC:1.14.19.6 EC:1.14.19.22	Lipid biosynthesis proteins	ko01004	deepkoala
K13907	CSTA_B; cystatin-A/B	-	Exosome	ko04147	deepkoala
K18757	LARP1; la-related protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala
K24537	KAT14; cysteine-rich protein 2-binding protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →