Gene detail

Detailed information of g7077.t1 in Acropora digitifera

Genomic Location: chr3Alt:26627115...26641691
NR annotation: XP_015748143.1, PREDICTED: potassium voltage-gated channel subfamily A member 7-like isoform X3 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr3Alt.g7077.t1

TCGTTTGTCACACTGACAAAGATACCAAGTATTATTCGACCCTGCTACAACGCGAACTGACAAATAGATCTCTTAACCAGCACTCCAGCAGTCTATGAATGCCTGCAAGCATTTCATTTTCTTCAAGGATAAGTTGACCAACAGAATTCTCTATTGCATCAACTTGGCAGGGATGATTTCGGTGGTTTTACCGAGTCTCCATTCTGAGCGCTGAGGAAATGAAGCCGCGCTGTTTCAGGGCACTAAAGAAAAGCCTGATGTGTGACGACGGAAAACTACTACCGGACTCCGCGAATGGAGAAATGGGAGCGAATTTAGGTTCACATGGGGCATTCACGTTAAGACTTAAGAAACGAGAGGTCACGACCAAAGTAGCGCCTCCAGAACGCAATGCCGGTATCTGCAGCAGTCGAGAACTTGATAGCGATGATCGCGAAGCTTCGGGAAGCAGTGGCGACCAAAGTACATCCGGCTGCGTTAGAAAACGACCGCCGTCCAAACGGCGTCGTATCGTTATAAATGTGTCGGGATTCCGATACATGACTTACGCAAAGACATTAGAGAGGTTCCCCACAACTCTGCTAGGAAATAAAGTCAAAAGAGATGAATTTTACGACGAGGATCACGACGAATATTTCTTCGATCGGAACATTCAAGTGTTTGAATTAATTTTGTACTTCTATCAATCAAATGGCCGATTGGTCTGTCCGCCTGAGCTCGCCCCAGAAATGTTACTAGAGGAAGTGGAATTTTTCAAACTCGGAGAAGCCGCTGTAAATGCGGTAAAAGACATTCTGAACGATGATGATTCCCCAGACAAGCCACAGACATGGCCAGAAAAGAAAGTACAGAAATTTATTTGGAAATTGTTTGAAGTTCCCGATTCGAGTAAAGCCGCGCGCGTGTTGGCGCTGCTATCTGTTTCGGTTATCGTGGCTTCGATAGTTGTTTTATGCATAGAAACGCTTCCAGAGTTTACAGTTTTGTCCAACGATACTATTCCTGCAAACGACACTGTCAAGCAACAGCAAATCAAAGAGCATAACGCCTATGCGCAATCGGTGAAATCTGTGTTCTCTTTGCTTGAGATTGTATTCATCAGCTGGTTCACTTTCGAATATCTGGTTCGATTATTCGCCAGTCCGGAGAAATGGCTATTCGTTCGTTCTTTTTTAAACGTAATTGATTTATTGGCTATATTGCCCTTTTACGTCGAATTGGCGCTCAAGAACACAGACAGTCAGAACTTTTCGCTGGCATTTCTTCGAATTTTAAGACTTGTGCGTGTGTTTCGAATTTTCAAACTATCACGGCATTCGAGTGGACTTCAAATACTCGGGCATACACTAAGAAAGAGTCTGCGTGAACTTGGGCTATTAATTTTTTTCCTCGCCATCGGAGTAGTAATTTTCTCAAGCATGGTTTATTACGCTGAAAATGGAGTGGAAGAAACATATTTTAAAAGTATCCCGGATGCATTTTGGTGGGCTCTTGTTACCATGACAACGGTCGGCTATGGCGACATGTATCCCCAGACTCTTTGGGGCAAGCTGGTTGGGTCGTGTTGTGCATTGTGTGGGGTACTGGCGATTGCTCTTCCTGTGCCAGTGATCGTCTCGAACTTTGACACGATTTATAAAAAGTATAGAAGTCGAAAGCTGAAGCAACAAGGCCAGTTGGAGGCGGAGGAGGAGAGACCCAGGAAAGTGAGTTTGATGTTCTCTCCTCGAAAAACATCTGAAAACAATGGCCAACAGGCTGAATCTCAAGATGTGCAACTTGAATTACTCAACGGTAAGGAACATTCGAAAACAGACATCAACGAGGACAAATGGAATGGAAATGTCGTGCAAGTGGATGAGAAGAAAGCCGAGAATGACTCTGAGCCTTCTATCAAAAACGAGAAAAATTGTTCCCGCGAAAAGAGTCTCGGCTTTAATCCAGAAAACCCGTCGGAAATCATCTCATTGCTTTCAGATCAACAAGAGTCGTTTGCCAAACTCGATCAGACAAATGTTTAAAAACTATAAGGTGCCGACTAACGAAAATTTGTTTTTCTGAAGTCAATGAACGAACAAGGAGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09470	Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens OX=9606 GN=KCNA1 PE=1 SV=2
P16388	Potassium voltage-gated channel subfamily A member 1 OS=Mus musculus OX=10090 GN=Kcna1 PE=1 SV=1
P10499	Potassium voltage-gated channel subfamily A member 1 OS=Rattus norvegicus OX=10116 GN=Kcna1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02214 all species →	BTB_2	BTB/POZ domain	Domain	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR003968 all species →	Family	Potassium channel, voltage dependent, Kv	Interproscan
IPR003972 all species →	Family	Potassium channel, voltage dependent, Kv1	Interproscan
IPR003131 all species →	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11537 all species →	VOLTAGE-GATED POTASSIUM CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0005251 all species →	Molecular Function	delayed rectifier potassium channel activity	Interproscan
GO:0008076 all species →	Cellular Component	voltage-gated potassium channel complex	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0051260 all species →	Biological Process	protein homooligomerization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04874	KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.