Gene detail

Detailed information of g7078.t1 in Acropora digitifera

Genomic Location: chr3Alt:26643667...26656704
NR annotation: XP_029193964.1, protein lin-54 homolog [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RBN8	Protein lin-54 homolog OS=Pongo abelii OX=9601 GN=LIN54 PE=2 SV=1
Q08CM4	Protein lin-54 homolog OS=Danio rerio OX=7955 GN=lin54 PE=1 SV=1
Q571G4	Protein lin-54 homolog OS=Mus musculus OX=10090 GN=Lin54 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03638 all species →	TCR	Tesmin/TSO1-like CXC domain, cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005172 all species →	Domain	CRC domain	Interproscan
IPR033467 all species →	Domain	Tesmin/TSO1-like CXC domain	Interproscan
IPR028307 all species →	Family	Lin-54 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12446 all species →	TESMIN/TSO1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21776	LIN54; protein lin-54	-	Cellular senescence	ko04218	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.