Gene detail

Detailed information of g71.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: OGG95272.1, hypothetical protein A2527_08870 [Candidatus Lambdaproteobacteria bacterium RIFOXYD2_FULL_50_16]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q748F5	Flagellar P-ring protein OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=flgI PE=3 SV=1
A5G8X8	Flagellar P-ring protein OS=Geotalea uraniireducens (strain Rf4) OX=351605 GN=flgI PE=3 SV=1
Q39YJ7	Flagellar P-ring protein OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=flgI PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000015 (this species only)
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0000051 (this species only)
Orthogroup (gene family)	OG0000220 (this species only)
Orthogroup (gene family)	OG0001097 (this species only)
Orthogroup (gene family)	OG0002567 (this species only)
Orthogroup (gene family)	OG0002911 (this species only)
Orthogroup (gene family)	OG0004375 (this species only)
Orthogroup (gene family)	OG0006512 (this species only)
Orthogroup (gene family)	OG0008026 (this species only)
Orthogroup (gene family)	OG0036193 (this species only)
Orthogroup (gene family)	OG0172064 (this species only)
Orthogroup (gene family)	OG0172505 (this species only)
Orthogroup (gene family)	OG0173033 (this species only)
Orthogroup (gene family)	OG0173563 (this species only)
Transcription factor family	THAP · all TF in this species
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00107 all species →	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan
PF00109 all species →	ketoacyl-synt	Beta-ketoacyl synthase, N-terminal domain	Domain	Interproscan
PF02801 all species →	Ketoacyl-synt_C	Beta-ketoacyl synthase, C-terminal domain	Domain	Interproscan
PF02119 all species →	FlgI	Flagellar P-ring protein	Family	Interproscan
PF07727 all species →	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF05485 all species →	THAP	THAP domain	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF07426 all species →	Dynactin_p22	Dynactin subunit p22	Family	Interproscan
PF11629 all species →	Mst1_SARAH	C terminal SARAH domain of Mst1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR052993 all species →	Family	Cilia- and flagella-associated protein 57	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011048 all species →	Homologous_superfamily	Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily	Interproscan
IPR013149 all species →	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR051603 all species →	Family	Zinc-Containing ADH Family: Quinone Oxidoreductase/CCCR	Interproscan
IPR014030 all species →	Domain	Beta-ketoacyl synthase, N-terminal	Interproscan
IPR000794 all species →	Family	Beta-ketoacyl synthase	Interproscan
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR014031 all species →	Domain	Beta-ketoacyl synthase, C-terminal	Interproscan
IPR020841 all species →	Domain	Polyketide synthase, beta-ketoacyl synthase domain	Interproscan
IPR018201 all species →	Active_site	Beta-ketoacyl synthase, active site	Interproscan
IPR001782 all species →	Family	Flagellar P-ring protein	Interproscan
IPR013103 all species →	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR006612 all species →	Domain	THAP-type zinc finger	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR004083 all species →	Family	Regulatory associated protein of TOR	Interproscan
IPR009991 all species →	Family	Dynactin subunit 3	Interproscan
IPR024205 all species →	Domain	Mst1/2 SARAH domain	Interproscan
IPR036674 all species →	Homologous_superfamily	p53-like tetramerisation domain superfamily	Interproscan
IPR011524 all species →	Domain	SARAH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32215 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57	Interproscan
PTHR44154 all species →	QUINONE OXIDOREDUCTASE	Interproscan
PTHR11712 all species →	POLYKETIDE SYNTHASE-RELATED	Interproscan
PTHR30381 all species →	FLAGELLAR P-RING PERIPLASMIC PROTEIN FLGI	Interproscan
PTHR42648 all species →	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR12848 all species →	REGULATORY-ASSOCIATED PROTEIN OF MTOR	Interproscan
PTHR28360 all species →	DYNACTIN SUBUNIT 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0003960 all species →	Molecular Function	NADPH:quinone reductase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0070402 all species →	Molecular Function	NADPH binding	Interproscan
GO:0004315 all species →	Molecular Function	3-oxoacyl-[acyl-carrier-protein] synthase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0009428 all species →	Cellular Component	bacterial-type flagellum basal body, distal rod, P ring	Interproscan
GO:0030288 all species →	Cellular Component	outer membrane-bounded periplasmic space	Interproscan
GO:0071973 all species →	Biological Process	bacterial-type flagellum-dependent cell motility	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009267 all species →	Biological Process	cellular response to starvation	Interproscan
GO:0010506 all species →	Biological Process	regulation of autophagy	Interproscan
GO:0030307 all species →	Biological Process	positive regulation of cell growth	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0031929 all species →	Biological Process	TOR signaling	Interproscan
GO:0031931 all species →	Cellular Component	TORC1 complex	Interproscan
GO:0038202 all species →	Biological Process	TORC1 signaling	Interproscan
GO:0071230 all species →	Biological Process	cellular response to amino acid stimulus	Interproscan
GO:0071902 all species →	Biological Process	positive regulation of protein serine/threonine kinase activity	Interproscan
GO:0005869 all species →	Cellular Component	dynactin complex	Interproscan
GO:0061640 all species →	Biological Process	cytoskeleton-dependent cytokinesis	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0051262 all species →	Biological Process	protein tetramerization	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02394	flgI; flagellar P-ring protein FlgI	-	Bacterial motility proteins	ko02035	deepkoala
K09458	fabF, OXSM, CEM1; 3-oxoacyl-[acyl-carrier-protein] synthase II	EC:2.3.1.179	Lipid biosynthesis proteins	ko01004	deepkoala
K12593	MPHOSPH6, MPP6; M-phase phosphoprotein 6, animal type	-	Messenger RNA biogenesis	ko03019	deepkoala
K24729	CFAP57, WDR65; cilia- and flagella-associated protein 57	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.