Gene detail

Detailed information of g714.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_001634070.2, isochorismatase domain-containing protein 2 [Nematostella vectensis]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5X0W9	Isochorismatase domain-containing protein 1 OS=Salmo salar OX=8030 GN=isoc1 PE=2 SV=1
Q5PQA5	Isochorismatase domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=isoc1 PE=2 SV=1
Q0IHU5	Isochorismatase domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=isoc1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000017 (this species only)
Orthogroup (gene family)	OG0000779 (this species only)
Orthogroup (gene family)	OG0002037 (this species only)
Orthogroup (gene family)	OG0003489 (this species only)
Orthogroup (gene family)	OG0005247 (this species only)
Orthogroup (gene family)	OG0005559 (this species only)
Orthogroup (gene family)	OG0005687 (this species only)
Orthogroup (gene family)	OG0006503 (this species only)
Orthogroup (gene family)	OG0008721 (this species only)
Orthogroup (gene family)	OG0014200 (this species only)
Orthogroup (gene family)	OG0018998 (this species only)
Orthogroup (gene family)	OG0024471 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09398 all species →	FOP_dimer	FOP N terminal dimerisation domain	Domain	Interproscan
PF10233 all species →	Cg6151-P	Uncharacterized conserved protein CG6151-P	Domain	Interproscan
PF00857 all species →	Isochorismatase	Isochorismatase family	Family	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF14933 all species →	CEP19	CEP19-like protein	Family	Interproscan
PF03792 all species →	PBC	PBC domain	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018993 all species →	Domain	FGFR1 oncogene partner (FOP), N-terminal dimerisation domain	Interproscan
IPR019365 all species →	Family	TVP18/Calcium channel flower	Interproscan
IPR036380 all species →	Homologous_superfamily	Isochorismatase-like superfamily	Interproscan
IPR050993 all species →	Family	Isochorismatase domain-containing protein	Interproscan
IPR000868 all species →	Domain	Isochorismatase-like	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR045221 all species →	Family	Sphingomyelin synthase-like	Interproscan
IPR029412 all species →	Family	Centrosomal protein of 19kDa	Interproscan
IPR005542 all species →	Domain	PBX, PBC domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR039421 all species →	Family	Type 1 protein exporter	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10150 all species →	DNA REPAIR ENDONUCLEASE XPF	Interproscan
PTHR15431 all species →	FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR13314 all species →	UNCHARACTERIZED	Interproscan
PTHR14119 all species →	HYDROLASE	Interproscan
PTHR21290 all species →	SPHINGOMYELIN SYNTHETASE	Interproscan
PTHR31539 all species →	CENTROSOMAL PROTEIN OF 19K CEP19	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR43394 all species →	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000014 all species →	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0000110 all species →	Cellular Component	nucleotide-excision repair factor 1 complex	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006296 all species →	Biological Process	obsolete nucleotide-excision repair, DNA incision, 5'-to lesion	Interproscan
GO:1901255 all species →	Biological Process	nucleotide-excision repair involved in interstrand cross-link repair	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0034453 all species →	Biological Process	microtubule anchoring	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016780 all species →	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0033188 all species →	Molecular Function	sphingomyelin synthase activity	Interproscan
GO:0046513 all species →	Biological Process	ceramide biosynthetic process	Interproscan
GO:0047493 all species →	Molecular Function	ceramide cholinephosphotransferase activity	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0034454 all species →	Biological Process	microtubule anchoring at centrosome	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0097712 all species →	Biological Process	vesicle targeting, trans-Golgi to periciliary membrane compartment	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0015421 all species →	Molecular Function	ABC-type oligopeptide transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03134	TAF10; transcription initiation factor TFIID subunit 10	-	Chromosome and associated proteins	ko03036	deepkoala
K05658	ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1	EC:7.6.2.2	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.