Detailed information of g716.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_035676777.1, RNA helicase aquarius-like [Branchiostoma floridae]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O60306RNA helicase aquarius OS=Homo sapiens OX=9606 GN=AQR PE=1 SV=4
Q8CFQ3RNA helicase aquarius OS=Mus musculus OX=10090 GN=Aqr PE=1 SV=2
O94508Pre-mRNA-splicing factor cwf11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf11 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilybHLH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21144Aquarius_N_3rdIntron-binding protein aquarius insert domainDomainInterproscan
PF13086AAA_11AAA domainDomainInterproscan
PF21143Aquarius_N_2ndIntron-binding protein aquarius, beta-barrelDomainInterproscan
PF16399Aquarius_N_1stIntron-binding protein aquarius N-terminalRepeatInterproscan
PF13087AAA_12AAA domainDomainInterproscan
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan
PF02932Neur_chan_membNeurotransmitter-gated ion-channel transmembrane regionFamilyInterproscan
PF10591SPARC_Ca_bdgSecreted protein acidic and rich in cysteine Ca binding regionDomainInterproscan
PF07647SAM_2SAM domain (Sterile alpha motif)DomainInterproscan
PF12736CABITCell-cycle sustaining, positive selection, DomainInterproscan
PF17814LisH_TPLLisH-like dimerisation domainDomainInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047187DomainUpf1-like, C-terminal helicase domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR048967DomainRNA helicase aquarius, insertion domainInterproscan
IPR041677DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR045055FamilyDNA2/NAM7-like helicaseInterproscan
IPR048966DomainRNA helicase aquarius, beta-barrelInterproscan
IPR032174DomainRNA helicase aquarius, N-terminal domainInterproscan
IPR026300FamilyCWF11 familyInterproscan
IPR041679DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR018000Conserved_siteNeurotransmitter-gated ion-channel, conserved siteInterproscan
IPR038050Homologous_superfamilyNeuronal acetylcholine receptorInterproscan
IPR002394FamilyNicotinic acetylcholine receptorInterproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR036719Homologous_superfamilyNeurotransmitter-gated ion-channel transmembrane domain superfamilyInterproscan
IPR006029DomainNeurotransmitter-gated ion-channel transmembrane domainInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR019577DomainSPARC/Testican, calcium-binding domainInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR025946DomainCABIT domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR040067FamilyWD repeat-containing protein 47Interproscan
IPR006595DomainCTLH, C-terminal LisH motifInterproscan
IPR006594Conserved_siteLIS1 homology motifInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR050433FamilyMyc family transcription factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10887DNA2/NAM7 HELICASE FAMILYInterproscan
PTHR18945NEUROTRANSMITTER GATED ION CHANNELInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR19863NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOGInterproscan
PTHR45851MYC PROTO-ONCOGENEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0005231Molecular Functionexcitatory extracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0007268Biological Processchemical synaptic transmissionInterproscan
GO:0030594Molecular Functionneurotransmitter receptor activityInterproscan
GO:0042391Biological Processregulation of membrane potentialInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0045202Cellular ComponentsynapseInterproscan
GO:0050877Biological Processnervous system processInterproscan
GO:1904315Molecular Functiontransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potentialInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0022848Molecular Functionacetylcholine-gated monoatomic cation-selective channel activityInterproscan
GO:0045211Cellular Componentpostsynaptic membraneInterproscan
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04377MYC; Myc proto-oncogene protein-Spliceosomeko03041deepkoala
Messenger RNA biogenesisko03019deepkoala

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