Detailed information of g717.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_052767636.1, uncharacterized protein LOC128208212 isoform X2 [Mya arenaria]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q92889DNA repair endonuclease XPF OS=Homo sapiens OX=9606 GN=ERCC4 PE=1 SV=3
Q9QZD4DNA repair endonuclease XPF OS=Mus musculus OX=10090 GN=Ercc4 PE=1 SV=3
Q9QYM7DNA repair endonuclease XPF OS=Cricetulus griseus OX=10029 GN=ERCC4 PE=2 SV=3
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|F-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05649Peptidase_M13_NPeptidase family M13FamilyInterproscan
PF01431Peptidase_M13Peptidase family M13FamilyInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF02732ERCC4ERCC4 domainDomainInterproscan
PF00378ECH_1Enoyl-CoA hydratase/isomeraseDomainInterproscan
PF00583Acetyltransf_1Acetyltransferase (GNAT) familyFamilyInterproscan
PF01607CBM_14Chitin binding Peritrophin-A domainDomainInterproscan
PF12937F-box-likeF-box-likeDomainInterproscan
PF14244Retrotran_gag_3gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF02995DUF229Protein of unknown function (DUF229)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000718FamilyPeptidase M13Interproscan
IPR008753DomainPeptidase M13, N-terminal domainInterproscan
IPR018497DomainPeptidase M13, C-terminal domainInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR050520FamilyINO80/SWR1 chromatin remodeling helicaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR011335Homologous_superfamilyRestriction endonuclease type II-likeInterproscan
IPR006166DomainERCC4 domainInterproscan
IPR047520DomainDNA repair endonuclease XPF, nuclease domainInterproscan
IPR014748Homologous_superfamilyEnoyl-CoA hydratase, C-terminalInterproscan
IPR052377FamilyMitochondrial enoyl-CoA hydratase domain-containing proteinInterproscan
IPR001753FamilyEnoyl-CoA hydratase/isomeraseInterproscan
IPR029045Homologous_superfamilyClpP/crotonase-like domain superfamilyInterproscan
IPR016181Homologous_superfamilyAcyl-CoA N-acyltransferaseInterproscan
IPR051556FamilyN-terminal and lysine N-acetyltransferaseInterproscan
IPR000182DomainGNAT domainInterproscan
IPR002557DomainChitin binding domainInterproscan
IPR036508Homologous_superfamilyChitin binding domain superfamilyInterproscan
IPR001810DomainF-box domainInterproscan
IPR036047Homologous_superfamilyF-box-like domain superfamilyInterproscan
IPR008996Homologous_superfamilyCytokine IL1/FGFInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR029472DomainRetrotransposon Copia-like, N-terminalInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR004245FamilyProtein of unknown function DUF229Interproscan
IPR017850Homologous_superfamilyAlkaline-phosphatase-like, core domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11733ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATEDInterproscan
PTHR45685HELICASE SRCAP-RELATEDInterproscan
PTHR10150DNA REPAIR ENDONUCLEASE XPFInterproscan
PTHR43602-Interproscan
PTHR42919N-ALPHA-ACETYLTRANSFERASEInterproscan
PTHR37610CCHC-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10974UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0016485Biological Processprotein processingInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0000812Cellular ComponentSwr1 complexInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0043044Biological Processchromatin remodelingInterproscan
GO:0043486Biological Processobsolete histone exchangeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0004518Molecular Functionnuclease activityInterproscan
GO:0000014Molecular Functionsingle-stranded DNA endodeoxyribonuclease activityInterproscan
GO:0000110Cellular Componentnucleotide-excision repair factor 1 complexInterproscan
GO:0000712Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0006296Biological Processobsolete nucleotide-excision repair, DNA incision, 5'-to lesionInterproscan
GO:1901255Biological Processnucleotide-excision repair involved in interstrand cross-link repairInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0016836Molecular Functionhydro-lyase activityInterproscan
GO:0007064Biological Processmitotic sister chromatid cohesionInterproscan
GO:0008080Molecular FunctionN-acetyltransferase activityInterproscan
GO:0031415Cellular ComponentNatA complexInterproscan
GO:0016747Molecular Functionacyltransferase activity, transferring groups other than amino-acyl groupsInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0008061Molecular Functionchitin bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K05810LACC1, yfiH; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminaseEC:2.4.2.1
EC:2.4.2.28
EC:3.5.4.4
Chromosome and associated proteinsko03036deepkoala
Cysteine and methionine metabolismko00270deepkoala

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