Detailed information of g718.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_012563324.2, mesoderm induction early response protein 1-like [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q811S7Upstream-binding protein 1 OS=Mus musculus OX=10090 GN=Ubp1 PE=1 SV=1
Q9NZI7Upstream-binding protein 1 OS=Homo sapiens OX=9606 GN=UBP1 PE=1 SV=1
Q12800Alpha-globin transcription factor CP2 OS=Homo sapiens OX=9606 GN=TFCP2 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyCP2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04516CP2CP2 transcription factorFamilyInterproscan
PF03937Sdh5Flavinator of succinate dehydrogenaseDomainInterproscan
PF12763EF-hand_4Cytoskeletal-regulatory complex EF handFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00640PIDPhosphotyrosine interaction domain (PTB/PID)DomainInterproscan
PF13650Asp_protease_2Aspartyl proteaseDomainInterproscan
PF09072TMA7Translation machinery associated TMA7FamilyInterproscan
PF02463SMC_NRecF/RecN/SMC N terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007604DomainCP2 transcription factorInterproscan
IPR040167FamilyTranscription factor CP2-likeInterproscan
IPR005631FamilyFlavinator of succinate dehydrogenaseInterproscan
IPR036714Homologous_superfamilyFlavinator of succinate dehydrogenase superfamilyInterproscan
IPR040138FamilyMesoderm induction early response protein/metastasis-associated proteinInterproscan
IPR000949DomainELM2 domainInterproscan
IPR000261DomainEH domainInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR001005DomainSANT/Myb domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR006020DomainPTB/PI domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR051133FamilyAdapter and Engulfment Domain-Containing ProteinInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR015157FamilyTranslation machinery associated TMA7Interproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003395DomainRecF/RecN/SMC, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11037TRANSCRIPTION FACTOR CP2Interproscan
PTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALInterproscan
PTHR10865METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEINInterproscan
PTHR11216EH DOMAINInterproscan
PTHR46459E1A-BINDING PROTEIN P400-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11232PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBERInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0001228Molecular FunctionDNA-binding transcription activator activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006099Biological Processtricarboxylic acid cycleInterproscan
GO:0006121Biological Processmitochondrial electron transport, succinate to ubiquinoneInterproscan
GO:0018293Biological Processprotein-FAD linkageInterproscan
GO:0034553Biological Processmitochondrial respiratory chain complex II assemblyInterproscan
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0003714Molecular Functiontranscription corepressor activityInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0016575Biological Processobsolete histone deacetylationInterproscan
GO:0042826Molecular Functionhistone deacetylase bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006897Biological ProcessendocytosisInterproscan
GO:0016197Biological Processendosomal transportInterproscan
GO:0042734Cellular Componentpresynaptic membraneInterproscan
GO:0060090Molecular Functionmolecular adaptor activityInterproscan
GO:0097708Cellular Componentintracellular vesicleInterproscan
GO:0150007Biological Processclathrin-dependent synaptic vesicle endocytosisInterproscan
GO:0000812Cellular ComponentSwr1 complexInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complexInterproscan
GO:0043967Biological Processobsolete histone H4 acetylationInterproscan
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0030915Cellular ComponentSmc5-Smc6 complexInterproscan
GO:0035861Cellular Componentsite of double-strand breakInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K22804SMC6; structural maintenance of chromosomes protein 6-Membrane traffickingko04131deepkoala
DNA repair and recombination proteinsko03400deepkoala

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