Detailed information of g72.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCG8335096.1, serine hydroxymethyltransferase [Pseudomonadota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
C6E348Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) OX=443144 GN=glyA PE=3 SV=1
B5E8U0Serine hydroxymethyltransferase OS=Citrifermentans bemidjiense (strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem) OX=404380 GN=glyA PE=3 SV=1
B8J189Serine hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB) OX=525146 GN=glyA PE=3 SV=1
Gene familySubfamily
Ubiquitin FamilyDUB|OTU|OTU
Ubiquitin FamilyDUB|ULP|ULP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06244Ccdc124Coiled-coil domain-containing protein 124 /Oxs1FamilyInterproscan
PF00464SHMTSerine hydroxymethyltransferaseDomainInterproscan
PF02502LacAB_rpiBRibose/Galactose IsomeraseFamilyInterproscan
PF02902Peptidase_C48Ulp1 protease family, C-terminal catalytic domainDomainInterproscan
PF10444Nbl1_Borealin_NNbl1 / Borealin N terminalFamilyInterproscan
PF02338OTUOTU-like cysteine proteaseFamilyInterproscan
PF00514ArmArmadillo/beta-catenin-like repeatRepeatInterproscan
PF08385DHC_N1Dynein heavy chain, N-terminal region 1FamilyInterproscan
PF08393DHC_N2Dynein heavy chain, N-terminal region 2FamilyInterproscan
PF12774AAA_6Hydrolytic ATP binding site of dynein motor regionDomainInterproscan
PF12775AAA_7P-loop containing dynein motor regionDomainInterproscan
PF17852Dynein_AAA_lidDynein heavy chain AAA lid domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01699Na_Ca_exSodium/calcium exchanger proteinFamilyInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF00168C2C2 domainDomainInterproscan
PF06292MUNMUN domainRepeatInterproscan
PF00153Mito_carrMitochondrial carrier proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010422FamilyCoiled-coil domain-containing protein 124/Oxs1Interproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR036569Homologous_superfamilySugar-phosphate isomerase, RpiB/LacA/LacB superfamilyInterproscan
IPR001085FamilySerine hydroxymethyltransferaseInterproscan
IPR039429DomainSerine hydroxymethyltransferase-like domainInterproscan
IPR049943FamilySerine hydroxymethyltransferase-likeInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR019798Binding_siteSerine hydroxymethyltransferase, pyridoxal phosphate binding siteInterproscan
IPR003500FamilySugar-phosphate isomerase, RpiB/LacA/LacB familyInterproscan
IPR015422Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR003653DomainUlp1 protease family, C-terminal catalytic domainInterproscan
IPR018851DomainBorealin, N-terminalInterproscan
IPR018867FamilyCell division protein borealinInterproscan
IPR003323DomainOTU domainInterproscan
IPR050704FamilyOTU domain-containing ubiquitin thioesteraseInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR000225RepeatArmadilloInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR013594DomainDynein heavy chain, tailInterproscan
IPR042228Homologous_superfamilyDynein heavy chain, linker, subdomain 3Interproscan
IPR026983FamilyDynein heavy chainInterproscan
IPR013602DomainDynein heavy chain, linkerInterproscan
IPR035699DomainDynein heavy chain, hydrolytic ATP-binding dynein motor regionInterproscan
IPR042222Homologous_superfamilyDynein heavy chain, domain 2, N-terminalInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR041466DomainDynein heavy chain, AAA 5 extension domainInterproscan
IPR043157Homologous_superfamilyDynein heavy chain, AAA1 domain, small subdomainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR044880Homologous_superfamilyNCX, central ion-binding domain superfamilyInterproscan
IPR051171FamilyCalcium/Cation AntiporterInterproscan
IPR004837DomainSodium/calcium exchanger membrane regionInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR014770DomainMunc13 homology 1Interproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR052095FamilyUNC-13 domain-containing proteinInterproscan
IPR014772DomainMammalian uncoordinated homology 13, domain 2Interproscan
IPR000008DomainC2 domainInterproscan
IPR010439DomainMUN domainInterproscan
IPR018108RepeatMitochondrial substrate/solute carrierInterproscan
IPR023395Homologous_superfamilyMitochondrial carrier domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21680UNCHARACTERIZEDInterproscan
PTHR11680SERINE HYDROXYMETHYLTRANSFERASEInterproscan
PTHR12606SENTRIN/SUMO-SPECIFIC PROTEASEInterproscan
PTHR16040AUSTRALIN, ISOFORM A-RELATEDInterproscan
PTHR12419OTU DOMAIN CONTAINING PROTEINInterproscan
PTHR23314SPERM-ASSOCIATED ANTIGEN 6 ARMADILLO REPEAT-CONTAININGInterproscan
PTHR46532MALE FERTILITY FACTOR KL5Interproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11878SODIUM/CALCIUM EXCHANGERInterproscan
PTHR46599PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4Interproscan
PTHR45999UNC-13-4A, ISOFORM BInterproscan
PTHR46181MITOCHONDRIAL GLYCINE TRANSPORTERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003713Molecular Functiontranscription coactivator activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006366Biological Processtranscription by RNA polymerase IIInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0016853Molecular Functionisomerase activityInterproscan
GO:0004372Molecular Functionglycine hydroxymethyltransferase activityInterproscan
GO:0019264Biological Processglycine biosynthetic process from serineInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0035999Biological Processtetrahydrofolate interconversionInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006565Biological ProcessL-serine catabolic processInterproscan
GO:0006730Biological Processone-carbon metabolic processInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0046653Biological Processtetrahydrofolate metabolic processInterproscan
GO:0046655Biological Processfolic acid metabolic processInterproscan
GO:0050897Molecular Functioncobalt ion bindingInterproscan
GO:0070905Molecular Functionserine bindingInterproscan
GO:0016926Biological Processprotein desumoylationInterproscan
GO:0016929Molecular FunctiondeSUMOylase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008234Molecular Functioncysteine-type peptidase activityInterproscan
GO:0000070Biological Processmitotic sister chromatid segregationInterproscan
GO:0000775Cellular Componentchromosome, centromeric regionInterproscan
GO:0032133Cellular Componentchromosome passenger complexInterproscan
GO:0051233Cellular Componentspindle midzoneInterproscan
GO:0004843Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579Biological Processprotein deubiquitinationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003341Biological Processcilium movementInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0015630Cellular Componentmicrotubule cytoskeletonInterproscan
GO:0005858Cellular Componentaxonemal dynein complexInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0030286Cellular Componentdynein complexInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan
GO:0051959Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005432Molecular Functioncalcium:sodium antiporter activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0015491Molecular Functionobsolete cation:cation antiporter activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0030001Biological Processmetal ion transportInterproscan
GO:0030424Cellular ComponentaxonInterproscan
GO:0035725Biological Processsodium ion transmembrane transportInterproscan
GO:0042383Cellular ComponentsarcolemmaInterproscan
GO:0098703Biological Processcalcium ion import across plasma membraneInterproscan
GO:0098794Cellular ComponentpostsynapseInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0099503Cellular Componentsecretory vesicleInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0015187Molecular Functionglycine transmembrane transporter activityInterproscan
GO:1904983Biological Processglycine import into mitochondrionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12655OTUD5, DUBA; OTU domain-containing protein 5EC:3.4.19.12
Antifolate resistanceko01523deepkoala
Cytoskeleton proteinsko04812deepkoala
Cilium and associated proteinsko03037deepkoala
Chromosome and associated proteinsko03036deepkoala
Ubiquitin systemko04121deepkoala

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