Gene detail

Detailed information of g720.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_002154497.1, RNA polymerase II-associated factor 1 homolog isoform X1 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P2Y1	RNA polymerase II-associated factor 1 homolog OS=Xenopus tropicalis OX=8364 GN=paf1 PE=2 SV=1
Q8N7H5	RNA polymerase II-associated factor 1 homolog OS=Homo sapiens OX=9606 GN=PAF1 PE=1 SV=2
Q5RAX0	RNA polymerase II-associated factor 1 homolog OS=Pongo abelii OX=9601 GN=PAF1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000494 (this species only)
Orthogroup (gene family)	OG0002101 (this species only)
Orthogroup (gene family)	OG0002609 (this species only)
Orthogroup (gene family)	OG0003908 (this species only)
Orthogroup (gene family)	OG0004609 (this species only)
Orthogroup (gene family)	OG0004797 (this species only)
Orthogroup (gene family)	OG0005407 (this species only)
Orthogroup (gene family)	OG0006849 (this species only)
Orthogroup (gene family)	OG0007568 (this species only)
Orthogroup (gene family)	OG0011495 (this species only)
Orthogroup (gene family)	OG0014201 (this species only)
Orthogroup (gene family)	OG0019890 (this species only)
Orthogroup (gene family)	OG0036207 (this species only)
Orthogroup (gene family)	OG0039944 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04666 all species →	Glyco_transf_54	N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region	Family	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF01237 all species →	Oxysterol_BP	Oxysterol-binding protein	Family	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF03985 all species →	Paf1	Paf1	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006759 all species →	Family	Glycosyl transferase family 54	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR039726 all species →	Family	Pre-mRNA-processing factor Prp40	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR051885 all species →	Family	Coiled-coil domain-containing protein involved in ciliogenesis	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR024789 all species →	Family	Anaphase-promoting complex subunit 4	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR000648 all species →	Family	Oxysterol-binding protein	Interproscan
IPR037239 all species →	Homologous_superfamily	Oxysterol-binding protein superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR050384 all species →	Family	Endophilin/SH3RF	Interproscan
IPR007133 all species →	Family	RNA polymerase II associated factor Paf1	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12062 all species →	N-ACETYLGLUCOSAMINYLTRANSFERASE VI	Interproscan
PTHR11864 all species →	PRE-MRNA-PROCESSING PROTEIN PRP40	Interproscan
PTHR15654 all species →	UNCHARACTERIZED	Interproscan
PTHR13260 all species →	ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4	Interproscan
PTHR10972 all species →	OXYSTEROL-BINDING PROTEIN-RELATED	Interproscan
PTHR14167 all species →	SH3 DOMAIN-CONTAINING	Interproscan
PTHR23188 all species →	RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0045292 all species →	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0031145 all species →	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0034399 all species →	Cellular Component	nuclear periphery	Interproscan
GO:0070979 all species →	Biological Process	protein K11-linked ubiquitination	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0015248 all species →	Molecular Function	obsolete sterol transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15174	PAF1; RNA polymerase II-associated factor 1	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.