Detailed information of g720.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002154497.1, RNA polymerase II-associated factor 1 homolog isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6P2Y1RNA polymerase II-associated factor 1 homolog OS=Xenopus tropicalis OX=8364 GN=paf1 PE=2 SV=1
Q8N7H5RNA polymerase II-associated factor 1 homolog OS=Homo sapiens OX=9606 GN=PAF1 PE=1 SV=2
Q5RAX0RNA polymerase II-associated factor 1 homolog OS=Pongo abelii OX=9601 GN=PAF1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyUBD|Other|SH3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04666Glyco_transf_54N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved regionFamilyInterproscan
PF00397WWWW domainDomainInterproscan
PF12894ANAPC4_WD40Anaphase-promoting complex subunit 4 WD40 domainRepeatInterproscan
PF01237Oxysterol_BPOxysterol-binding protein FamilyInterproscan
PF14604SH3_9Variant SH3 domainDomainInterproscan
PF03985Paf1Paf1 FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006759FamilyGlycosyl transferase family 54Interproscan
IPR001202DomainWW domainInterproscan
IPR039726FamilyPre-mRNA-processing factor Prp40Interproscan
IPR036020Homologous_superfamilyWW domain superfamilyInterproscan
IPR051885FamilyCoiled-coil domain-containing protein involved in ciliogenesisInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR024789FamilyAnaphase-promoting complex subunit 4Interproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR024977DomainAnaphase-promoting complex subunit 4-like, WD40 domainInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR000648FamilyOxysterol-binding proteinInterproscan
IPR037239Homologous_superfamilyOxysterol-binding protein superfamilyInterproscan
IPR001452DomainSH3 domainInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR050384FamilyEndophilin/SH3RFInterproscan
IPR007133FamilyRNA polymerase II associated factor Paf1Interproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12062N-ACETYLGLUCOSAMINYLTRANSFERASE VIInterproscan
PTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40Interproscan
PTHR15654UNCHARACTERIZEDInterproscan
PTHR13260ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4Interproscan
PTHR10972OXYSTEROL-BINDING PROTEIN-RELATEDInterproscan
PTHR14167SH3 DOMAIN-CONTAININGInterproscan
PTHR23188RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOGInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006487Biological Processprotein N-linked glycosylationInterproscan
GO:0008375Molecular Functionacetylglucosaminyltransferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0005930Cellular ComponentaxonemeInterproscan
GO:0036064Cellular Componentciliary basal bodyInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0005680Cellular Componentanaphase-promoting complexInterproscan
GO:0031145Biological Processanaphase-promoting complex-dependent catabolic processInterproscan
GO:0034399Cellular Componentnuclear peripheryInterproscan
GO:0070979Biological Processprotein K11-linked ubiquitinationInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008289Molecular Functionlipid bindingInterproscan
GO:0015248Molecular Functionobsolete sterol transporter activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0032934Molecular Functionsterol bindingInterproscan
GO:0043231Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0007015Biological Processactin filament organizationInterproscan
GO:0016477Biological Processcell migrationInterproscan
GO:0000993Molecular FunctionRNA polymerase II complex bindingInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0016593Cellular ComponentCdc73/Paf1 complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15174PAF1; RNA polymerase II-associated factor 1-Transcription machineryko03021deepkoala

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