Gene detail

Detailed information of g722.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047141785.1, calmodulin-alpha isoform X4 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q40302	Calmodulin OS=Macrocystis pyrifera OX=35122 PE=2 SV=3
P04464	Calmodulin OS=Triticum aestivum OX=4565 PE=1 SV=3
P02597	Calmodulin, striated muscle OS=Gallus gallus OX=9031 GN=CCM1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000123 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000222 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000760 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002962 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005334 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007116 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008077 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015599 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0037195 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF02970 all species →	TBCA	Tubulin binding cofactor A	Domain	Interproscan
PF20696 all species →	UbiD_C	3-octaprenyl-4-hydroxybenzoate carboxy-lyase C-terminal domain	Domain	Interproscan
PF01977 all species →	UbiD	3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rift-related domain	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR006759 all species →	Family	Glycosyl transferase family 54	Interproscan
IPR004226 all species →	Family	Tubulin binding cofactor A	Interproscan
IPR036126 all species →	Homologous_superfamily	Tubulin binding cofactor A superfamily	Interproscan
IPR049381 all species →	Domain	3-octaprenyl-4-hydroxybenzoate carboxy-lyase-like, C-terminal domain	Interproscan
IPR002830 all species →	Family	UbiD decarboxylyase family	Interproscan
IPR048304 all species →	Domain	3-octaprenyl-4-hydroxybenzoate carboxy-lyase-likw, Rift-related domain	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR050230 all species →	Family	Calcium-Regulated Muscle Contraction and Cellular Process	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan
IPR003409 all species →	Repeat	MORN repeat	Interproscan
IPR001565 all species →	Domain	Synaptotagmin	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR12062 all species →	N-ACETYLGLUCOSAMINYLTRANSFERASE VI	Interproscan
PTHR21500 all species →	TUBULIN-SPECIFIC CHAPERONE A	Interproscan
PTHR30108 all species →	3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED	Interproscan
PTHR23048 all species →	MYOSIN LIGHT CHAIN 1, 3	Interproscan
PTHR23065 all species →	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan
PTHR43215 all species →	RADIAL SPOKE HEAD 1 HOMOLOG	Interproscan
PTHR10024 all species →	SYNAPTOTAGMIN	Interproscan
PTHR14885 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0007021 all species →	Biological Process	tubulin complex assembly	Interproscan
GO:0007023 all species →	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0048487 all species →	Molecular Function	beta-tubulin binding	Interproscan
GO:0016831 all species →	Molecular Function	carboxy-lyase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006744 all species →	Biological Process	ubiquinone biosynthetic process	Interproscan
GO:0008694 all species →	Molecular Function	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016460 all species →	Cellular Component	myosin II complex	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007286 all species →	Biological Process	spermatid development	Interproscan
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0035082 all species →	Biological Process	axoneme assembly	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0001786 all species →	Molecular Function	phosphatidylserine binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0014059 all species →	Biological Process	regulation of dopamine secretion	Interproscan
GO:0017156 all species →	Biological Process	calcium-ion regulated exocytosis	Interproscan
GO:0017158 all species →	Biological Process	regulation of calcium ion-dependent exocytosis	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0048488 all species →	Biological Process	synaptic vesicle endocytosis	Interproscan
GO:0048791 all species →	Biological Process	calcium ion-regulated exocytosis of neurotransmitter	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan
GO:0071277 all species →	Biological Process	cellular response to calcium ion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02183	CALM; calmodulin	-	Exosome	ko04147	deepkoala
K17292	TBCA; tubulin-specific chaperone A	-	Exosome	ko04147	deepkoala
K24224	CFAP44, WDR52; cilia- and flagella-associated protein 44	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →