Gene detail

Detailed information of g7233.t1 in Montipora capitata

Genomic Location: Sc0000163:136656...161245
NR annotation: CAH3117210.1, unnamed protein product [Porites lobata]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g7233.t1

atgtctgggcctaacgctagaattgggttgagagtggagatcgtcggcaaggggcttgtgggcacagtggcctatgttggggccaccatgtttgcttcgggaaagtggattggtgtaattttggatgaagcgaagggaaaaaacgatggaacagttcaaggaaaagaatatttcaaatgtaaagaaaaccatggaatatttgtgaggcagtctcagatttcagtggttgaagatgtatcgtctttgccaactccatctcgtggttcagcatcacgttcaagtcttggagggttgtcatctattccaatgcctgcatcaatgaagaaagaaaagtcatttgggtcaagaggatccttggataatgggagtaacaagccctcacccccttcttccaaggtaccaacaccaaaaaccagcgtatcttctgctcctgacctgcctccggctgacagtccccccagcagcaagttgcctgcagtagctgcctcccttagcctgtctagtgagaagaaaacttcaggtccaaccatatctgctgatgaatactcggcgcttcagaaaaaggttcttgacaaagagaaggctttggttgatgtggaggagaagctggaaactttgaggagcaaacgacaagaagataaagcaaagatgaaagaattggaaaaaacaagaatgcaacttgaacagatgcaagaatacaagacgaggtggcaagaggcccaaagagatcttcaagctcaattgaatgcaacaaaaaaggaattaaaagagctcagtgaaaataagcaagagcacagcgacgaaatgacagaactgcaagaggctgttgaaatggcaacactagacaaagagatggcagaagaaaggttggaatcactgcaacaagaaaatgaacaattgaaggataaactagaggaagtttccctggacttagaaattctgaaaaatgaaatcagcgaaggaggaattgaaggtgcagctgcaaatgctcaagtaaaacaactagagcagcagaacagcagattaaaggaagcaatcttaaggctgaaagaagtgcaagctagtgataaattagagatgcaatccttgcagaaacaggtcagagaattgcaaagtgggaacacatcactgcagatggaaagagacaagctatctgaggaactacaggtagctgaggcatctcttgcagagctcaaagatcaggtggatactgcacttggagctgaagaaatggtagaaatgctcacggataacaatttagccttggaagaagaaatcaggtccctcaaagaaaatgttgctgacttggaagcactgcgtgatcttaatgaggaactggaagagaaccacgttcaaactgagcgagacttaagagaggaactggaattaaacaacaacaacgttcgggagatggaaagtaaactagtggctgctcaggaaaccattatggatcatcaacaaactatattaaaattcagggatttagtggcaaaactgcaagaaaacaacagagctatgcaagtacagaaggaagacactgagaaacagaagagcatagaaatcccttcacctgtattggttgacttcaaggtcaaggctgctgagtttaagagttttgcgaagacggttgagaatgacttgacaaagtacaaactgcaacaagcaaatgaacagataaagatgctccattcattcatgccagaatcgttcttaaggcgaggaggagataatgaaagtgtcctgttgctgttgctgattcctcgtctaagttataaaactgaattgcttcaatcacagcttagacaaaagtacgagatagcagaatgcctggaagagccagctaggattcatggtgaagatggtgaaagactaagttttgccactggtctcatttatcagctctctactctgcaggcagttgtgcagaacattgaaagggctcttgatgcatgtgatgctagtctattcaataaattagtgggcatctaccctgagttagctgttcatgagagagctgtggatacactgatagaattgttcaagaaagaccagcttggtgactcagtgtctgtggaacctttagacaaagctattcactactacactaccatggtgcggtttcacttggctggtaaacctgtgtcgtgttctgagtttttggctgatgaactaaagatatttaatgctggtatggaaggctctgctgtggaaattgaaaggctcaagaaattcactgagaactgtgatgaaggaagtgcttttggagaacttgtgcaagatatggaacttagaaacgtggaaatacaacaattatgcaggaagattaaacttcggatgcccgaggatcaaggcagtactttatcgttctcccaagagattcaagaatccttgatttcatgtgctaaacaacaaaaccttcagctgaagttctgtcagaagttggccatggttgtcgcccacaagggatcgcgtttagttggtaagatctgcgttggtagtcctgtgctggtaccaggtttcgctttttgtgctaagcaagattattag

Transcript

g7233.t1

ATGTCTGGGCCTAACGCTAGAATTGGGTTGAGAGTGGAGATCGTCGGCAAGGGGCTTGTGGGCACAGTGGCCTATGTTGGGGCCACCATGTTTGCTTCGGGAAAGTGGATTGGTGTAATTTTGGATGAAGCGAAGGGAAAAAACGATGGAACAGTTCAAGGAAAAGAATATTTCAAATGTAAAGAAAACCATGGAATATTTGTGAGGCAGTCTCAGATTTCAGTGGTTGAAGATGTATCGTCTTTGCCAACTCCATCTCGTGGTTCAGCATCACGTTCAAGTCTTGGAGGGTTGTCATCTATTCCAATGCCTGCATCAATGAAGAAAGAAAAGtCATTTGGGTCAAGAGGATCCTTGGATAATGGGAGTAACAAGCCCTCACCCCCTTCTTCCAAGGTACCAACACCAAAAACCAGCGTATCTTCTGCTCCTGACCTGCCTCCGGCTGACAGTCCCCCCAGCAGCAAGTTGCCTGCAGTAGCTGCCTCCCTTAGCCTGTCTAGTGAGAAGAAAACTTCAGGTCCAACCATATCTGCTGATGAATACTCGGCGCTTCAGAAAAAGgttctTGACAAAGAGAAGGCTTTGGTTGATGTGGAGGAGAAGCTGGAAACTTTGAGGAGCAAACGACAAGAAGATAAAGCAAAGATGAAAGAATTGGAAAAAACAAGAATGCAACTTGAACAGATGCAAGAATACAAGACGAGGTGGCAAGAGGCCCAAAGAGATCTTCAAGCTCAATTGAATGCAACAAAAAAGGAATTAAAAGAGCTCAGTGAAAATAAGCAAGAGCACAGCGACGAAATGACAGAACTGCAAGAGGCTGTTGAAATGGCAACACTAGACAAAGAGATGGCAGAAGAAAGGTTGGAATCACTGCAACAAGAAAATGAACAATTGAAGGATAAACTAGAGGAAGTTTCCCTGGACTTAGAAATTCTGAAAAATGAAATCAGCGAAGGAgGAATTGAAGGTGCAGCTGCAAATGCTCAAGTAAAACAACTAGAGCAGCAGAACAGCAGATTAAAGGAAGCAATCTTAAGGCTGAAAGAAGTGCAAGCTAGTGATAAATTAGAGATGCAATCCTTGCAGAAACAGGTCAGAGAATTGCAAAGTGGGAACACATCACTGCAGATGGAAAGAGACAAGCTATCTGAGGAACTACAGGTAGCTGAGGCATCTCTTGCAGAGCTCAAAGATCAGGTGGATACTGCACTTGGAGCTGAagaaatggtagaaatgctcaCGGATAACAATTTAGCCTTGGAAGAAGAAATCAGGTCCCTCAAAGAAAATGTTGCTGACTTGGAAGCACTGCGTGATCTTAATGAGGAACTGGAAGAGAACCACGTTCAAACTGAGCGAGACTTAAGAGAGGAACTGgaattaaacaacaacaacgttcgGGAGATGGAAAGTAAACTAGTGGCTGCTCAGGAAACCATTATGGATCATCAACAAACTATATTAAAATTCAGGGATTTAGTGGCAAAACTGCAAGAAAACAACAGAGCTATGCAAGTACAGAAGGAAGACACTGAGAAACAGAAGAGCATAGAAATCCCTTCACCTGTATTGGTTGACTTCAAGGTCAAGGCTGCTGAGTTTAAGAGTTTTGCGAAGACGGTTGAGAATGACTTGACAAAGTACAAACTGCAACAAGCAAATGAACAGATAAAGATGCTCCATTCATTCATGCCAGAATCGTTCTTAAGGCGAGGAGGAGATAATGAAAGTGTCCTGTTGCTGTTGCTGATTCCTCGTCTAAGTTATAAAACTGAATTGCTTCAATCACAGCTTAGACAAAAGTACGAGATAGCAGAATGCCTGGAAGAGCCAGCTAGGATTCATGGTGAAGATGGTGAAAGACTAAGTTTTGCCACTGGTCTCATTTATCAGCTCTCTACTCTGCAGGCAGTTGTGCAGAACATTGAAAGGGCTCTTGATGCATGTGATGCTAGTCTATTCAATAAATTAGTGGGCATCTACCCTGAGTTAGCTGTTCATGAGAGAGCTGTGGATACACTGATAGAATTGTTCAAGAAAGACCAGCTTGGTGACTCAGTGTCTGTGGAACCTTTAGACAAAGCTATTCACTACTACACTACCATGGTGCGGTTTCACTTGGCTGGTAAACCTGTGTCGTGTTCTGAGTTTTTGGCTGATGAACTAAAGATATTTAATGCTGGTATGGAAGGCTCTGCTGTGGAAATTGAAAGGCTCAAGAAATTCACTGAGAACTGTGATGAAGGAAGTGCTTTTGGAGAACTTGTGCAAGATATGGAACTTAGAAACGTGGAAATACAACAATTATGCAGGAAGATTAAACTTCGGATGCCCGAGGATCAAGGCAGTACTTTATCGTTCTCCCAAGAGATTCAAGAATCCTTGATTTCATGTGCTAAACAACAAAACCTTCAGCTGAAGTTCTGTCAGAAGTTGGCCATGGTTGTCGCCCACAAGGGATCGCGTTTAGTTGGTAAGATCTGCGTTGGTAGTCCTGTGCTGGTACCAGGTTTCGCTTTTTGTGCTAAGCAAGATTATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35458	Dynactin subunit 1 OS=Gallus gallus OX=9031 GN=DCTN1 PE=1 SV=2
Q6PCJ1	Dynactin subunit 1 OS=Xenopus laevis OX=8355 GN=dctn1 PE=2 SV=1
Q14203	Dynactin subunit 1 OS=Homo sapiens OX=9606 GN=DCTN1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004311 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12455 all species →	Dynactin	Dynein associated protein	Family	Interproscan
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR022157 all species →	Domain	Dynein associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18916 all species →	DYNACTIN 1-RELATED MICROTUBULE-BINDING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04648	DCTN1; dynactin 1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.