Gene detail

Detailed information of g725.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_020603546.1, 28S ribosomal protein S18a, mitochondrial-like [Orbicella faveolata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D4A9K4	MFS-type transporter SLC18B1 OS=Rattus norvegicus OX=10116 GN=Slc18b1 PE=1 SV=3
Q68EH7	Homeobox protein Hox-C8a OS=Danio rerio OX=7955 GN=hoxc8a PE=2 SV=1
Q9YH13	Homeobox protein Hox-C8 OS=Gallus gallus OX=9031 GN=HOXC8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000082 (this species only)
Orthogroup (gene family)	OG0000715 (this species only)
Orthogroup (gene family)	OG0002700 (this species only)
Orthogroup (gene family)	OG0004580 (this species only)
Orthogroup (gene family)	OG0005026 (this species only)
Orthogroup (gene family)	OG0007815 (this species only)
Orthogroup (gene family)	OG0009320 (this species only)
Orthogroup (gene family)	OG0016180 (this species only)
Orthogroup (gene family)	OG0016180 (this species only)
Orthogroup (gene family)	OG0032577 (this species only)
Orthogroup (gene family)	OG0080536 (this species only)
Orthogroup (gene family)	OG0171222 (this species only)
Orthogroup (gene family)	OG0172339 (this species only)
Orthogroup (gene family)	OG0173822 (this species only)
Orthogroup (gene family)	OG0174611 (this species only)
Transcription factor family	Homeobox · all TF in this species
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF05622 all species →	HOOK	HOOK protein coiled-coil region	Coiled-coil	Interproscan
PF19047 all species →	HOOK_N	HOOK domain	Domain	Interproscan
PF01084 all species →	Ribosomal_S18	Ribosomal protein S18	Family	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF13176 all species →	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051456 all species →	Family	DNA Polymerase III Delta Subunit	Interproscan
IPR008921 all species →	Homologous_superfamily	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005790 all species →	Family	DNA polymerase III, delta subunit	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR050930 all species →	Family	Major Facilitator Superfamily Vesicular Transporter	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR008636 all species →	Domain	Hook, C-terminal	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR043936 all species →	Domain	HOOK, N-terminal	Interproscan
IPR036870 all species →	Homologous_superfamily	Small ribosomal subunit protein bS18 superfamily	Interproscan
IPR001648 all species →	Family	Small ribosomal subunit protein bS18	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR046333 all species →	Family	Homeobox protein Hox-A10/abdominal-B-like	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR020479 all species →	Domain	Homeobox domain, metazoa	Interproscan
IPR038825 all species →	Family	Apical junction component	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052386 all species →	Family	G-protein-signaling modulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR34388 all species →	DNA POLYMERASE III SUBUNIT DELTA	Interproscan
PTHR23506 all species →	-	Interproscan
PTHR14003 all species →	TRANSCRIPTIONAL REPRESSOR PROTEIN YY	Interproscan
PTHR18947 all species →	HOOK PROTEINS	Interproscan
PTHR13479 all species →	30S RIBOSOMAL PROTEIN S18	Interproscan
PTHR45874 all species →	HOMEOBOX PROTEIN ABDOMINAL-B	Interproscan
PTHR21517 all species →	UNCHARACTERIZED	Interproscan
PTHR38681 all species →	RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED	Interproscan
PTHR45954 all species →	LD33695P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0009360 all species →	Cellular Component	DNA polymerase III complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0031519 all species →	Cellular Component	PcG protein complex	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0030705 all species →	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0070181 all species →	Molecular Function	small ribosomal subunit rRNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0043296 all species →	Cellular Component	apical junction complex	Interproscan
GO:0045216 all species →	Biological Process	cell-cell junction organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02340	holA; DNA polymerase III subunit delta	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala
K02963	RP-S18, MRPS18, rpsR; small subunit ribosomal protein S18	-	Ribosome	ko03011	deepkoala
K20828	ZNF143_76, STAF; zinc finger protein 143/76	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.