Detailed information of g725.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020603546.1, 28S ribosomal protein S18a, mitochondrial-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
D4A9K4MFS-type transporter SLC18B1 OS=Rattus norvegicus OX=10116 GN=Slc18b1 PE=1 SV=3
Q68EH7Homeobox protein Hox-C8a OS=Danio rerio OX=7955 GN=hoxc8a PE=2 SV=1
Q9YH13Homeobox protein Hox-C8 OS=Gallus gallus OX=9031 GN=HOXC8 PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF05622HOOKHOOK protein coiled-coil regionCoiled-coilInterproscan
PF19047HOOK_NHOOK domainDomainInterproscan
PF01084Ribosomal_S18Ribosomal protein S18FamilyInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan
PF13176TPR_7Tetratricopeptide repeatRepeatInterproscan
PF13424TPR_12Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051456FamilyDNA Polymerase III Delta SubunitInterproscan
IPR008921Homologous_superfamilyDNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR005790FamilyDNA polymerase III, delta subunitInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR050930FamilyMajor Facilitator Superfamily Vesicular TransporterInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR008636DomainHook, C-terminalInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan
IPR043936DomainHOOK, N-terminalInterproscan
IPR036870Homologous_superfamilySmall ribosomal subunit protein bS18 superfamilyInterproscan
IPR001648FamilySmall ribosomal subunit protein bS18Interproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR046333FamilyHomeobox protein Hox-A10/abdominal-B-likeInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR020479DomainHomeobox domain, metazoaInterproscan
IPR038825FamilyApical junction componentInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR052386FamilyG-protein-signaling modulatorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR34388DNA POLYMERASE III SUBUNIT DELTAInterproscan
PTHR23506-Interproscan
PTHR14003TRANSCRIPTIONAL REPRESSOR PROTEIN YYInterproscan
PTHR18947HOOK PROTEINSInterproscan
PTHR1347930S RIBOSOMAL PROTEIN S18Interproscan
PTHR45874HOMEOBOX PROTEIN ABDOMINAL-BInterproscan
PTHR21517UNCHARACTERIZEDInterproscan
PTHR38681RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATEDInterproscan
PTHR45954LD33695PInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006261Biological ProcessDNA-templated DNA replicationInterproscan
GO:0009360Cellular ComponentDNA polymerase III complexInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0000790Cellular ComponentchromatinInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0031519Cellular ComponentPcG protein complexInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0031122Biological Processcytoplasmic microtubule organizationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005813Cellular ComponentcentrosomeInterproscan
GO:0030705Biological Processcytoskeleton-dependent intracellular transportInterproscan
GO:0051959Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0005763Cellular Componentmitochondrial small ribosomal subunitInterproscan
GO:0032543Biological Processmitochondrial translationInterproscan
GO:0070181Molecular Functionsmall ribosomal subunit rRNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0043296Cellular Componentapical junction complexInterproscan
GO:0045216Biological Processcell-cell junction organizationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02340holA; DNA polymerase III subunit deltaEC:2.7.7.7
Ribosomeko03011deepkoala
Transcription machineryko03021deepkoala
DNA repair and recombination proteinsko03400deepkoala

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