Gene detail

Detailed information of g7253.t1 in Acropora digitifera

Genomic Location: chr3Alt:28735440...28753493
NR annotation: XP_029203759.2, cytoplasmic aconitate hydratase-like [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g7253.t1

ATGGCCGCCGTCAAGAGTCAGTACACTTCTCAACTTAAGACTCTTTCCCTCAAGTGTGGAGAATGCTACTATTTTGATATTTCAAGTTTAAACGAAGAGCGATATGGGCGGCTACCATTCTCAATCAGGGTCTTGTTGGAGTCTGCTGTTCGTAATTGTGATGGCTTTCAAGTGAAGTCCAAAGATGTAGAGAACATTTTGGACTGGGAAAATAATCAGAAACAAAATGTTGAAATTCCATTCTTGCCATCCAGAGTTATTCTCCAAGATTTTACGGGAGTTCCTGCTGTGGTTGACTTTGCCGCCATGCGGGATGCAGTCAAGAGGCTGGGTGGGGAGCCAGATAAAATCAACCCACTTTGTCCAGTGGACCTTGTGATTGACCATTCAGTCCAAGTTGATGTGTCAAGAAGCCACACTAGATTATTTGACCCAGGTGGTAACTGGCCTCGGAAGGACAGTTCATGTCCATTTCACTCACTGGCTTGTGACTGCTCTACAGCACTTCAAAAGAATCAGGATATAGAATTCATGAGAAACAAAGAGAGATTTCTTTTTCTGAAGTGGGGCTCAAAAGCTTTCAAAAATATGACAATTGTCCCACCTGGCTCCGGCATAGTTCATCAGGTTAACCTGGAGTATCTTGGCCGTGTTGTGTTCAACATGAACAATGTTCTTTATCCTGACAGTGTTGTTGGCACAGACTCCCACACAACTATGATCAATGGACTGGGAATAGTTGGTTGGGGTGTTGGAGGCATTGAGGCTGAAGCTGTTATGTTAGGTCAAGCGATCAGCATGGTGTTGCCAAAAGTTGTTGGATATAAACTGACTGGACAGGTCAAACCGTACATCACATCTACTGATGTGGTACTCACCATTACAAAGCACCTTCGTCAAGTTGGTGTAGTTGGCAAGTTTGTTGAATTTTTTGGACCTGGTGTGAGTCATTTGTCCATAGCTGATAGAGCCACGATTGCAAATATGTGTCCAGAGTATGGTGCAACTATCGGCTTCTTTCCAGTGGATGAAAAGAGCTTAATGTACCTCAGGCAGACAGGTCGTCCTGATGAGGCATTGGAATGTGTTGAAACTTATCTGAAAGCAACGAAAATGTTCCGGGATTACTCTGACCCAGACAATGATCCAGTATTCTCAGAGGTCGTTGTCTTGGATTTGTCGACCGTAACATCCTCATTATCAGGACCCAAGAGACCCCATGACAGGGTCTCATTGTCCAGCATGAAGCAAGATTTTATTGATTGTCTCAACAATAGAGTAGGTTTTAAAGGATTTGGAATTCCAGTGGAAAAACAGTCAATTGAAGTTCCGTTTACTTTTGATGGGAAGGAATACAAGCTTTCGCATGGTTCTGTTGTTATTGCTGCCATAACAAGTTGTACAAACACTAGTAACCCATCAGTTATGCTTGGAGCAGGGATGGTGGCCAAGAAGGCGGTAGAACTTGGATTAGAGGTCAAGCCTTACATTAAGACAAGCTTATCCCCAGGATCAGGGGTGGTCACGTATTATCTTCGCGAGAGTGGAGTCATACCAAGCCTGGAAAAACTAGGATTTCATATTGTAGGTTATGGTTGCATGACTTGTATAGGAAACTCTGGCCCTTTATCAGAACCAGTGGCTGAGGCAATTGAGAAGGGTGATCTTGTCGCCGCGGGCATTTTATCAGGGAACAGGAATTTCGAAGGACGTATCCATCCCCTGACCAGAGCAAACTACCTAGCCTCCCCTCCCCTAGTTGTTGCCTATGCCATCGCAGGGACAACACTCATAGACTTTGAGAAGGAACCCCTTGGTATATCCAAAGACGGGAAAGAAGTGTTCCTCACTGATATTTGGCCAACGCGAGAAGAACTCCAGGCTGTTGAGAGACAATATGTGATTCCTGCAATGTTTAAAGAAGTATATGCAAAAGTAACGACTGGAAACCCTCGCTGGAACTCACTTGAAGCTCCCGACAGTTTGCTGTACCCGTGGGACCCCAAGTCCACCTACATAAAGCACCCCCCTTTCTTTGAAACAATGGAAAAGGAATTCCCCGCACGTGAGAGCATCAAAGACGCCGCTGTACTCTTAAACCTGGGCGACTCTGTGACCACTGACCACATTTCACCGGCGGGTAGCATTGCTCGCACAAGTCCTGCAGCACGTTATCTGGCTGCGAATGGACTGGCTCCTCGAGAATTCAACTCCTACGGATCCCGACGTGGAAACGACGCCGTTATGACTCGTGGAACCTTTGCCAACATCCGACTGGTCAACAAATTTATCGGAAAAGCTGCACCTAAAACAGTCCACTTTCCTTCCGGAGATACGATGGATATATTTGATGCCTCTGAGCGTTACCGAGAGGAAAAACGCCAGCTTATCATCCTGGCCGGTAAGGATTATGGGTCGGGGTCGTCACGTGACTGGGCTGCCAAAGGACCGTGGATGCTGGGTGTCAAAGCTGTGATCACCGAGAGCTTTGAACGAATTCACCGGAGCAATCTGGTAGGAATGGGTATTATACCCTTGGAGTACCTTCCCGGCCAGAACGCTGAGAGCTTGGGACTCACTGGAAAGGAAAGTTACTCCATTGAAATACCGGATGATTTGAAGACTGGACAAATCTTGAATGTTGAGTTAAGCGATGGCCGCTCGTTTCAAGCCAAAGTTCGTTTTGACACTGATGTGGAACTCCTGTACTTCAAACATGGCGGCATTCTGAATTACATGATCAGAAGCATGCTCCAGTGA

Transcript

chr3Alt.g7253.t1

ACAACAATCTGTCACGCGTGACATGGCTTCTTTCAATAAAGAGGCGTGACAAATCATCGTTGACCGTGATGCTTTGCAGTCTTTAAAACGTCGCATGTCCTTTATACTTAGATCAAATTTCATATCAACATGGCCGCCGTCAAGAGTCAGTACACTTCTCAACTTAAGACTCTTTCCCTCAAGTGTGGAGAATGCTACTATTTTGATATTTCAAGTTTAAACGAAGAGCGATATGGGCGGCTACCATTCTCAATCAGGGTCTTGTTGGAGTCTGCTGTTCGTAATTGTGATGGCTTTCAAGTGAAGTCCAAAGATGTAGAGAACATTTTGGACTGGGAAAATAATCAGAAACAAAATGTTGAAATTCCATTCTTGCCATCCAGAGTTATTCTCCAAGATTTTACGGGAGTTCCTGCTGTGGTTGACTTTGCCGCCATGCGGGATGCAGTCAAGAGGCTGGGTGGGGAGCCAGATAAAATCAACCCACTTTGTCCAGTGGACCTTGTGATTGACCATTCAGTCCAAGTTGATGTGTCAAGAAGCCACACTAGATTATTTGACCCAGGTGGTAACTGGCCTCGGAAGGACAGTTCATGTCCATTTCACTCACTGGCTTGTGACTGCTCTACAGCACTTCAAAAGAATCAGGATATAGAATTCATGAGAAACAAAGAGAGATTTCTTTTTCTGAAGTGGGGCTCAAAAGCTTTCAAAAATATGACAATTGTCCCACCTGGCTCCGGCATAGTTCATCAGGTTAACCTGGAGTATCTTGGCCGTGTTGTGTTCAACATGAACAATGTTCTTTATCCTGACAGTGTTGTTGGCACAGACTCCCACACAACTATGATCAATGGACTGGGAATAGTTGGTTGGGGTGTTGGAGGCATTGAGGCTGAAGCTGTTATGTTAGGTCAAGCGATCAGCATGGTGTTGCCAAAAGTTGTTGGATATAAACTGACTGGACAGGTCAAACCGTACATCACATCTACTGATGTGGTACTCACCATTACAAAGCACCTTCGTCAAGTTGGTGTAGTTGGCAAGTTTGTTGAATTTTTTGGACCTGGTGTGAGTCATTTGTCCATAGCTGATAGAGCCACGATTGCAAATATGTGTCCAGAGTATGGTGCAACTATCGGCTTCTTTCCAGTGGATGAAAAGAGCTTAATGTACCTCAGGCAGACAGGTCGTCCTGATGAGGCATTGGAATGTGTTGAAACTTATCTGAAAGCAACGAAAATGTTCCGGGATTACTCTGACCCAGACAATGATCCAGTATTCTCAGAGGTCGTTGTCTTGGATTTGTCGACCGTAACATCCTCATTATCAGGACCCAAGAGACCCCATGACAGGGTCTCATTGTCCAGCATGAAGCAAGATTTTATTGATTGTCTCAACAATAGAGTAGGTTTTAAAGGATTTGGAATTCCAGTGGAAAAACAGTCAATTGAAGTTCCGTTTACTTTTGATGGGAAGGAATACAAGCTTTCGCATGGTTCTGTTGTTATTGCTGCCATAACAAGTTGTACAAACACTAGTAACCCATCAGTTATGCTTGGAGCAGGGATGGTGGCCAAGAAGGCGGTAGAACTTGGATTAGAGGTCAAGCCTTACATTAAGACAAGCTTATCCCCAGGATCAGGGGTGGTCACGTATTATCTTCGCGAGAGTGGAGTCATACCAAGCCTGGAAAAACTAGGATTTCATATTGTAGGTTATGGTTGCATGACTTGTATAGGAAACTCTGGCCCTTTATCAGAACCAGTGGCTGAGGCAATTGAGAAGGGTGATCTTGTCGCCGCGGGCATTTTATCAGGGAACAGGAATTTCGAAGGACGTATCCATCCCCTGACCAGAGCAAACTACCTAGCCTCCCCTCCCCTAGTTGTTGCCTATGCCATCGCAGGGACAACACTCATAGACTTTGAGAAGGAACCCCTTGGTATATCCAAAGACGGGAAAGAAGTGTTCCTCACTGATATTTGGCCAACGCGAGAAGAACTCCAGGCTGTTGAGAGACAATATGTGATTCCTGCAATGTTTAAAGAAGTATATGCAAAAGTAACGACTGGAAACCCTCGCTGGAACTCACTTGAAGCTCCCGACAGTTTGCTGTACCCGTGGGACCCCAAGTCCACCTACATAAAGCACCCCCCTTTCTTTGAAACAATGGAAAAGGAATTCCCCGCACGTGAGAGCATCAAAGACGCCGCTGTACTCTTAAACCTGGGCGACTCTGTGACCACTGACCACATTTCACCGGCGGGTAGCATTGCTCGCACAAGTCCTGCAGCACGTTATCTGGCTGCGAATGGACTGGCTCCTCGAGAATTCAACTCCTACGGATCCCGACGTGGAAACGACGCCGTTATGACTCGTGGAACCTTTGCCAACATCCGACTGGTCAACAAATTTATCGGAAAAGCTGCACCTAAAACAGTCCACTTTCCTTCCGGAGATACGATGGATATATTTGATGCCTCTGAGCGTTACCGAGAGGAAAAACGCCAGCTTATCATCCTGGCCGGTAAGGATTATGGGTCGGGGTCGTCACGTGACTGGGCTGCCAAAGGACCGTGGATGCTGGGTGTCAAAGCTGTGATCACCGAGAGCTTTGAACGAATTCACCGGAGCAATCTGGTAGGAATGGGTATTATACCCTTGGAGTACCTTCCCGGCCAGAACGCTGAGAGCTTGGGACTCACTGGAAAGGAAAGTTACTCCATTGAAATACCGGATGATTTGAAGACTGGACAAATCTTGAATGTTGAGTTAAGCGATGGCCGCTCGTTTCAAGCCAAAGTTCGTTTTGACACTGATGTGGAACTCCTGTACTTCAAACATGGCGGCATTCTGAATTACATGATCAGAAGCATGCTCCAGTGATACGGCCGCTGACATAATGCTATGCAGATCGCTATTGAAGGAAAACATGGCAGTGATGACGCGTGTGCATATAAACTATTTATTTTTTTGCGAGGGAGATCTGTCAAAATAAACGAGTGAAACTGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28271	Cytoplasmic aconitate hydratase OS=Mus musculus OX=10090 GN=Aco1 PE=1 SV=3
Q01059	Cytoplasmic aconitate hydratase OS=Oryctolagus cuniculus OX=9986 GN=ACO1 PE=1 SV=1
Q90875	Cytoplasmic aconitate hydratase OS=Gallus gallus OX=9031 GN=ACO1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00694 all species →	Aconitase_C	Aconitase C-terminal domain	Domain	Interproscan
PF00330 all species →	Aconitase	Aconitase family (aconitate hydratase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000573 all species →	Domain	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain	Interproscan
IPR015931 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	Interproscan
IPR006249 all species →	Family	Aconitase/Iron-responsive element-binding protein 2	Interproscan
IPR001030 all species →	Domain	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain	Interproscan
IPR036008 all species →	Homologous_superfamily	Aconitase, iron-sulfur domain	Interproscan
IPR015928 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase, swivel	Interproscan
IPR018136 all species →	Binding_site	Aconitase family, 4Fe-4S cluster binding site	Interproscan
IPR044137 all species →	Domain	Aconitase A, swivel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11670 all species →	ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003994 all species →	Molecular Function	aconitate hydratase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006101 all species →	Biological Process	citrate metabolic process	Interproscan
GO:0030350 all species →	Molecular Function	iron-responsive element binding	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01681	ACO, acnA; aconitate hydratase	EC:4.2.1.3	Carbon fixation pathways in prokaryotes	ko00720	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.