Detailed information of g728.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: NXD16146.1, FRDA protein [Nothocercus nigrocapillus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q05B87Frataxin, mitochondrial OS=Bos taurus OX=9913 GN=FXN PE=2 SV=1
O35943Frataxin, mitochondrial OS=Mus musculus OX=10090 GN=Fxn PE=1 SV=1
Q16595Frataxin, mitochondrial OS=Homo sapiens OX=9606 GN=FXN PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05153MIOXMyo-inositol oxygenaseFamilyInterproscan
PF00909Ammonium_transpAmmonium Transporter FamilyFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF21788TNP-like_GBDTNP-like, GTP-binding insertion domainDomainInterproscan
PF21787TNP-like_RNaseH_NTNP-like, RNase H N-terminal domainDomainInterproscan
PF01491Frataxin_CyayFrataxin-like domainDomainInterproscan
PF00786PBDP21-Rho-binding domainDomainInterproscan
PF00568WH1WH1 domainDomainInterproscan
PF02205WH2WH2 motifFamilyInterproscan
PF00004AAAATPase family associated with various cellular activities (AAA)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007828FamilyInositol oxygenaseInterproscan
IPR029020Homologous_superfamilyAmmonium/urea transporterInterproscan
IPR024041DomainAmmonium transporter AmtB-like domainInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR052035FamilyZinc finger BED domain-containingInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR038441Homologous_superfamilyTHAP-type zinc finger superfamilyInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR048366DomainTransposable element P transposase-like, GTP-binding insertion domainInterproscan
IPR052224FamilyTHAP domain-containing proteinInterproscan
IPR048365DomainTransposable element P transposase-like, RNase H domain, N-terminalInterproscan
IPR020895Conserved_siteFrataxin conserved siteInterproscan
IPR002908FamilyFrataxin/CyaYInterproscan
IPR036524Homologous_superfamilyFrataxin/CyaY superfamilyInterproscan
IPR017789FamilyFrataxinInterproscan
IPR000095DomainCRIB domainInterproscan
IPR000697DomainWH1/EVH1 domainInterproscan
IPR029061Homologous_superfamilyThiamin diphosphate-binding foldInterproscan
IPR011026Homologous_superfamilyActin nucleation-promoting factor WAS, C-terminalInterproscan
IPR003124DomainWH2 domainInterproscan
IPR036936Homologous_superfamilyCRIB domain superfamilyInterproscan
IPR051412FamilyFormin Homology Diaphanous subfamilyInterproscan
IPR033927DomainWASP family, EVH1 domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR050168FamilyAAA ATPase domain-containing proteinInterproscan
IPR047533DomainPeroxisomal biogenesis factor 6, second ATPase domainInterproscan
IPR003960Conserved_siteATPase, AAA-type, conserved siteInterproscan
IPR003959DomainATPase, AAA-type, coreInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12588MYOINOSITOL OXYGENASEInterproscan
PTHR11730AMMONIUM TRANSPORTERInterproscan
PTHR33395TRANSCRIPTASE, PUTATIVE-RELATED-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46481ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4Interproscan
PTHR46927AGAP005574-PAInterproscan
PTHR16821FRATAXINInterproscan
PTHR45691PROTEIN DIAPHANOUSInterproscan
PTHR33244INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR23077AAA-FAMILY ATPASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005506Molecular Functioniron ion bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0019310Biological Processinositol catabolic processInterproscan
GO:0050113Molecular Functioninositol oxygenase activityInterproscan
GO:0008519Molecular Functionammonium channel activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0072488Biological Processammonium transmembrane transportInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0097272Biological Processammonium homeostasisInterproscan
GO:0008199Molecular Functionferric iron bindingInterproscan
GO:0016226Biological Processiron-sulfur cluster assemblyInterproscan
GO:0004322Molecular Functionferroxidase activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006879Biological Processintracellular iron ion homeostasisInterproscan
GO:0018283Biological Processiron incorporation into metallo-sulfur clusterInterproscan
GO:0008198Molecular Functionferrous iron bindingInterproscan
GO:0034986Molecular Functioniron chaperone activityInterproscan
GO:0051537Molecular Function2 iron, 2 sulfur cluster bindingInterproscan
GO:0007015Biological Processactin filament organizationInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0005884Cellular Componentactin filamentInterproscan
GO:0030041Biological Processactin filament polymerizationInterproscan
GO:0005778Cellular Componentperoxisomal membraneInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0016558Biological Processprotein import into peroxisome matrixInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23209THAP9; DNA transposase THAP9EC:2.7.7.-
Mitochondrial biogenesisko03029deepkoala
Membrane traffickingko04131deepkoala
Chromosome and associated proteinsko03036deepkoala

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