Gene detail

Detailed information of g730.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_030853714.1, uncharacterized protein LOC115929239 [Strongylocentrotus purpuratus]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36954	DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE=1 SV=1
P60898	DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i PE=1 SV=1
P60899	DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa OX=9823 GN=POLR2I PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000015 (this species only)
Orthogroup (gene family)	OG0000018 (this species only)
Orthogroup (gene family)	OG0000081 (this species only)
Orthogroup (gene family)	OG0000103 (this species only)
Orthogroup (gene family)	OG0000167 (this species only)
Orthogroup (gene family)	OG0002136 (this species only)
Orthogroup (gene family)	OG0003927 (this species only)
Orthogroup (gene family)	OG0004743 (this species only)
Orthogroup (gene family)	OG0008920 (this species only)
Orthogroup (gene family)	OG0009375 (this species only)
Orthogroup (gene family)	OG0014419 (this species only)
Orthogroup (gene family)	OG0019888 (this species only)
Orthogroup (gene family)	OG0027678 (this species only)
Orthogroup (gene family)	OG0032542 (this species only)
Orthogroup (gene family)	OG0041261 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00884 all species →	Sulfatase	Sulfatase	Family	Interproscan
PF02150 all species →	RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	Domain	Interproscan
PF01096 all species →	TFIIS_C	Transcription factor S-II (TFIIS)	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF20231 all species →	DUF6589	Family of unknown function (DUF6589)	Family	Interproscan
PF00006 all species →	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF09783 all species →	Vac_ImportDeg	Vacuolar import and degradation protein	Family	Interproscan
PF16300 all species →	WD40_4	Type of WD40 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000917 all species →	Domain	Sulfatase, N-terminal	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR047115 all species →	Family	Arylsulfatase B	Interproscan
IPR012164 all species →	Family	DNA-directed RNA polymerase subunit/transcription factor S	Interproscan
IPR019761 all species →	Conserved_site	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	Interproscan
IPR001529 all species →	Domain	DNA-directed RNA polymerase, M/15kDa subunit	Interproscan
IPR001222 all species →	Domain	Zinc finger, TFIIS-type	Interproscan
IPR034012 all species →	Domain	Pol II subunit B9, C-terminal zinc ribbon	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR046496 all species →	Domain	Domain of unknown function DUF6589	Interproscan
IPR050053 all species →	Family	ATPase alpha/beta chains	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR020003 all species →	Active_site	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Interproscan
IPR000194 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR024034 all species →	Homologous_superfamily	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Interproscan
IPR018618 all species →	Family	Vacuolar import/degradation protein Vid24	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR015505 all species →	Family	Coronin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10342 all species →	ARYLSULFATASE	Interproscan
PTHR46704 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR11239 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR15184 all species →	ATP SYNTHASE	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR33244 all species →	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR14534 all species →	VACUOLAR IMPORT AND DEGRADATION PROTEIN 24	Interproscan
PTHR10856 all species →	CORONIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008484 all species →	Molecular Function	sulfuric ester hydrolase activity	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0001193 all species →	Biological Process	maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006283 all species →	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0005753 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex	Interproscan
GO:0042776 all species →	Biological Process	proton motive force-driven mitochondrial ATP synthesis	Interproscan
GO:0045261 all species →	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0007039 all species →	Biological Process	protein catabolic process in the vacuole	Interproscan
GO:0034657 all species →	Cellular Component	GID complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0045721 all species →	Biological Process	negative regulation of gluconeogenesis	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03017	RPB9, POLR2I; DNA-directed RNA polymerase II subunit RPB9	-	DNA repair and recombination proteins	ko03400	deepkoala
K14557	UTP6; U3 small nucleolar RNA-associated protein 6	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.