Detailed information of g730.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_030853714.1, uncharacterized protein LOC115929239 [Strongylocentrotus purpuratus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P36954DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE=1 SV=1
P60898DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i PE=1 SV=1
P60899DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa OX=9823 GN=POLR2I PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00884SulfataseSulfataseFamilyInterproscan
PF02150RNA_POL_M_15KDRNA polymerases M/15 Kd subunitDomainInterproscan
PF01096TFIIS_CTranscription factor S-II (TFIIS)DomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF20231DUF6589Family of unknown function (DUF6589)FamilyInterproscan
PF00006ATP-synt_abATP synthase alpha/beta family, nucleotide-binding domainDomainInterproscan
PF09783Vac_ImportDegVacuolar import and degradation proteinFamilyInterproscan
PF16300WD40_4Type of WD40 repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000917DomainSulfatase, N-terminalInterproscan
IPR017850Homologous_superfamilyAlkaline-phosphatase-like, core domain superfamilyInterproscan
IPR047115FamilyArylsulfatase BInterproscan
IPR012164FamilyDNA-directed RNA polymerase subunit/transcription factor SInterproscan
IPR019761Conserved_siteDNA-directed RNA polymerase M, 15kDa subunit, conserved siteInterproscan
IPR001529DomainDNA-directed RNA polymerase, M/15kDa subunitInterproscan
IPR001222DomainZinc finger, TFIIS-typeInterproscan
IPR034012DomainPol II subunit B9, C-terminal zinc ribbonInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR046496DomainDomain of unknown function DUF6589Interproscan
IPR050053FamilyATPase alpha/beta chainsInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR020003Active_siteATPase, alpha/beta subunit, nucleotide-binding domain, active siteInterproscan
IPR000194DomainATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainInterproscan
IPR024034Homologous_superfamilyATPase, F1/V1 complex, beta/alpha subunit, C-terminalInterproscan
IPR018618FamilyVacuolar import/degradation protein Vid24Interproscan
IPR029058Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR015505FamilyCoroninInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10342ARYLSULFATASEInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR11239DNA-DIRECTED RNA POLYMERASEInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR15184ATP SYNTHASEInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR33244INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR14534VACUOLAR IMPORT AND DEGRADATION PROTEIN 24Interproscan
PTHR10856CORONINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008484Molecular Functionsulfuric ester hydrolase activityInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0001193Biological Processmaintenance of transcriptional fidelity during transcription elongation by RNA polymerase IIInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan
GO:0006283Biological Processtranscription-coupled nucleotide-excision repairInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0005753Cellular Componentobsolete mitochondrial proton-transporting ATP synthase complexInterproscan
GO:0042776Biological Processproton motive force-driven mitochondrial ATP synthesisInterproscan
GO:0045261Cellular Componentproton-transporting ATP synthase complex, catalytic core F(1)Interproscan
GO:0046933Molecular Functionproton-transporting ATP synthase activity, rotational mechanismInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006623Biological Processprotein targeting to vacuoleInterproscan
GO:0007039Biological Processprotein catabolic process in the vacuoleInterproscan
GO:0034657Cellular ComponentGID complexInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0045721Biological Processnegative regulation of gluconeogenesisInterproscan
GO:0007015Biological Processactin filament organizationInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14557UTP6; U3 small nucleolar RNA-associated protein 6-DNA repair and recombination proteinsko03400deepkoala
Ribosome biogenesisko03009deepkoala

TOP