Gene detail

Detailed information of g7331.t1 in Acropora digitifera

Genomic Location: chr3Alt:29712942...29715083
NR annotation: XP_029194378.1, developmentally-regulated GTP-binding protein 2-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr3Alt.g7331.t1

AGTCAAGTGGGCTCCTGCGCGAAAACACGCTTGCGCATAAAATTCTGGGTTCACTGCTGAAACGAAACATCACAGTGAAAATCATTCGCCATCTTTTTATCGAGCATTTCAGACGCAACGTGGTTGAATAGGGCCTGTATTTCTCTTCAAAATGGGAATCCTGGAAAGAATCAGCGAAGTCGAAAAGGAAATTGCAAGGACTCAAAAAAACAAGGCGACAGAATACCATCTCGGGTTGCTCAAAGCAAAGTTGGCAAAATACCGTTCCCAGCTTTTGGAACCGCCAAAATCTGCTGGTGCCAAGGGAGAAGGGTTTGATGTCATGAAATCTGGCGACGCTAGGGTCGCTCTCATCGGCTTCCCGTCCGTGGGAAAATCAACCCTGCTCAATAAGTTGACATCGACATCTAGTGTTAGCGCCTCATATGAGTTTACGACCTTAACTTGTATCCCCGGTGTTGTAGATTACAATGGAGCAAATATACAATTGCTCGATTTGCCAGGTATTATTGAAGGAGCCGCTCAAGGAAAGGGAAGAGGCAAACAAGTGATTGCTGTCGCTCGTACGGCTGACATGGTGGTGATGATGTTAGATTCAGTGAAGGGGGAAATCCAAAAAGGTTTGCTTGAGAAGGAATTAGAGGATTGTGGTATCCGACTAAACTGCCCCAAACCAAATATATACTTTAAGGTGAAAAAGGGAGGAGGTGTTGCATTCAATGCCACTTGTACTCTTACTCATCTTGATGAGAAATTGGTACAAATGATTCTCCATGAGTACAAAATTTTTAATGCTGAAGTTCTTATCAGAGAAGACTGCACTGCAGATCAATTGATTGATGTCATCTCTGCAAATAGAATATACATGCCTTGTCTGTATGTGTACAACAAGATAGACTGCATCTCTATAGAAGAAGTGGATCGTCTTGCTCGTCTTCCACACTCTGTTGTTGTCAGTTGTGAAATGGAACTGAACTTGGATTATTTGTTGATGCAAATATGGGAACATCTTGCCCTGCTGAGAGTTTACACCAAGAAGAGAGGTGAGCCGCCTGACTTCAGTGGCGGCCTGATTCTACGCCGTGGGGCTACAGTGGAACATGTGTGCCATGTCATTCACAGAACACTCGCAGATGTCTTCAAATATGCCTTGGTATGGGGCACCAGTACCAAATACAGTCCACAAAGAGTAGGAATTAATCATGTTATGAATGACGAAGATGTTATTCAAATAATGAAAAAGTGATAATATAGTGGTTTCCAATATAATATGCACCTATCATTCAAATCTTTGTGACCCACCCCTTTCCTGGCATGTGGAATTTGGACCAAAAGTGCAAATTACTCAGGCTTGTAAGTTGAATAACACACATGGACACTTAAGTGGGCAAATGCCTCATAATGAAAGGACTGCAAAAGCTTTTTAGTATTACTGAAAGTGAATGGAAATAGTAGAGCATACACTGAGACAGTGTCTGAATTATAGTGAAGGTATCGATGATATCACCAATTGATATTAACGTGCCAACCAGAACCTTATTGGCTGGTGAAACTGAGGGTTATTTTGTTTGGTAGTTGGCAAATTTGAATATCAAATGAAATTTGACGTCAATGTATGTATCTATTTATTTTGTATACTGCTCAGACTTAAGGAGAGGCATTAGAATACCACTTGTGGGCCATGGGACAAGAATTTGAATGATCCATTTGAAAGTTCAGATTCTTTTGAGTCACCTGGGAGAGGGTGGAAAGTTTAAACTGATCACTGCAGTTTCACTGTTACGTGTTTAAGCTGTTCTAAATGCCAAGCAAAATCATGGAGCTTGATTCTCTTTCTGTAAGGTATTGGTGAAGACTAACTTGACATTATTGTTATGTGCCAATCATGATTCTTGAAAGTATTATTCTTGTACTTCAGTCAAGCAATTTACACATAAGGTAAGCCTTCGGATAACCTTTTCTCAATCAATGACATCAATAAACAGAGTTGTCAAATAGCATTGTGGCCTGCCATGTTGTGGTGGAGCTGCAAATGGGAGTGGTGGGAGGGGGTTTCCTCCTTGTGCTAGGGGGGGTCCAATCCCGTTAAAACTCAACTCATTTCAGAGCGTTTGTATACTAAAATAAACCCCTTTTTCCTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55039	Developmentally-regulated GTP-binding protein 2 OS=Homo sapiens OX=9606 GN=DRG2 PE=1 SV=1
Q58D56	Developmentally-regulated GTP-binding protein 2 OS=Bos taurus OX=9913 GN=DRG2 PE=2 SV=1
Q9QXB9	Developmentally-regulated GTP-binding protein 2 OS=Mus musculus OX=10090 GN=Drg2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16897 all species →	MMR_HSR1_Xtn	C-terminal region of MMR_HSR1 domain	Family	Interproscan
PF02824 all species →	TGS	TGS domain	Domain	Interproscan
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031662 all species →	Domain	GTP binding protein, second domain	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR006074 all species →	Conserved_site	GTP1/OBG, conserved site	Interproscan
IPR004095 all species →	Domain	TGS	Interproscan
IPR012676 all species →	Homologous_superfamily	TGS-like	Interproscan
IPR045001 all species →	Family	Developmentally regulated GTP-binding protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031167 all species →	Domain	OBG-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43127 all species →	DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g7331.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g7331.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

20.0Max TPM

14.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	14.51	20.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	20.03
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	18.33
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	17.89
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	17.68
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	17.54
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	17.27
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	16.96
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	16.89
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	16.85
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	16.68
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	16.31
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	16.11
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	15.90
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	15.86
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	15.75
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	15.64
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	15.53
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	15.37
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	15.07
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	14.88
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	14.81
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	14.68
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	13.71
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	13.69
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	13.30
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	13.26
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	13.01
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	12.77
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	12.47
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	12.30
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	12.13
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	11.66
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	11.64
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	11.62
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	11.21
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	11.13
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	11.01
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	9.73
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	9.35

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.