Genomic Location: not available for this species
NR annotation: CAD7232653.1, unnamed protein product [Cyprideis torosa]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q9Z1M8 | Protein Red OS=Mus musculus OX=10090 GN=Ik PE=1 SV=2 |
| Q66HG8 | Protein Red OS=Rattus norvegicus OX=10116 GN=Ik PE=1 SV=1 |
| Q13123 | Protein Red OS=Homo sapiens OX=9606 GN=IK PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000096 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001984 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003438 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004965 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0006576 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0012673 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0024777 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0028155 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07808 all species → | RED_N | RED-like protein N-terminal region | Family | Interproscan |
| PF07807 all species → | RED_C | RED-like protein C-terminal region | Family | Interproscan |
| PF00069 all species → | Pkinase | Protein kinase domain | Domain | Interproscan |
| PF05029 all species → | TIMELESS_C | Timeless PAB domain | Domain | Interproscan |
| PF05970 all species → | PIF1 | PIF1-like helicase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012916 all species → | Domain | RED-like, N-terminal | Interproscan |
| IPR039896 all species → | Family | Protein Red-like | Interproscan |
| IPR037196 all species → | Homologous_superfamily | HSP90, C-terminal domain | Interproscan |
| IPR012492 all species → | Domain | Protein RED, C-terminal | Interproscan |
| IPR045906 all species → | Family | Serine/threonine-protein kinase ULK4 | Interproscan |
| IPR000719 all species → | Domain | Protein kinase domain | Interproscan |
| IPR011009 all species → | Homologous_superfamily | Protein kinase-like domain superfamily | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR007725 all species → | Domain | Timeless, C-terminal | Interproscan |
| IPR010285 all species → | Family | DNA helicase Pif1-like | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR050108 all species → | Family | Cyclin-dependent kinase | Interproscan |
| IPR017441 all species → | Binding_site | Protein kinase, ATP binding site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12765 all species → | RED PROTEIN IK FACTOR CYTOKINE IK | Interproscan |
| PTHR46240 all species → | SER/THR PROTEIN KINASE ULK4 | Interproscan |
| PTHR24056 all species → | CELL DIVISION PROTEIN KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000398 all species → | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0004672 all species → | Molecular Function | protein kinase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006468 all species → | Biological Process | protein phosphorylation | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0000723 all species → | Biological Process | telomere maintenance | Interproscan |
| GO:0003678 all species → | Molecular Function | DNA helicase activity | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0000307 all species → | Cellular Component | cyclin-dependent protein kinase holoenzyme complex | Interproscan |
| GO:0004674 all species → | Molecular Function | protein serine/threonine kinase activity | Interproscan |
| GO:0008024 all species → | Cellular Component | cyclin/CDK positive transcription elongation factor complex | Interproscan |
| GO:0008353 all species → | Molecular Function | RNA polymerase II CTD heptapeptide repeat kinase activity | Interproscan |
| GO:0030332 all species → | Molecular Function | cyclin binding | Interproscan |
| GO:0032968 all species → | Biological Process | positive regulation of transcription elongation by RNA polymerase II | Interproscan |
| GO:0070816 all species → | Biological Process | obsolete phosphorylation of RNA polymerase II C-terminal domain | Interproscan |
g736.t1.Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
