Gene detail

Detailed information of g7367.t1 in Acropora digitifera

Genomic Location: chr3Alt:30170671...30184391
NR annotation: XP_029204197.2, dual specificity tyrosine-phosphorylation-regulated kinase 2-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr3Alt.g7367.t1

TTTGATTGAAATTTGAAGAAAGAGTGCTTCTCTGCGAAGTATTGTTTTCATTGCTCTTGAAACTTCGAATTTGCCTTGACTTACTTTAATTGGTGACTGAAGTAAAAGATCTCAAGATTTTCATTTACACTGATTCTCATTCAGACATGGATTTTGCAGCCCTGATGGAAAATGAACATTTCCAAAGACGAGTGTCTCCTCCCAAAAGGTTTGTAGCAACTCAGTTGTCTGGGGGAGTGAAATCACTATATAAGCGCCTTAGAAACAAAGAGAAGCCCCCTCATCAAAGACATGTTCCAGGGGCTCAGACTGATCAGGATGGAAAATTTCAACCTTGCTATCCAGTTCCCTTGCTCGCTGGTCGTTACAAATTTATGCAGGTTCTTGGCCAGGGACAATCTTCAATCTTGATTGCTGTACAGGATACCTTTCACCCTGACAAGAGACCAGTTGCTGTCAAAGTTATGAACCTCAATAACTCTTATCTAGGAGCTCAGGAAGCAGAATGTGTTAGGAAGCTGAATGCAGCAGATGTGCTGAAGGTGTCACGGACAATTCAGTTGTTTAACACATTCACCTTTGAAGATCATTACTGCTTGGTGTTTGAACTTGTGTCCTCCAGGCCACTTCATCAGTATTTTCAGGACAGAAAATTGTCAGTTATCAGAAAAATAGCTCTACAGCTTGTGCAAGTGTTAGGATTCCTTAAGAGGCAAAATGTCATTCATGCAGACTTAAAACCTGAAAACATTCTTATTCAAGGAGGTGAAGATATAAATATCAAAGTGGTTGACTTTGGAAATGCCCTTCATTGTGTTGACCAAGAGGTTTCACTTTATTATGATGATTTCGAGTTACAGACTTTGGTTTATAGAGCGCCCGAGGTGATGTTTGGAATTCGTTTTGGCCTTGAAATAGACATGTGGTCGTTAGGATGTATTCTTGCAGAGTTGTATATTGGCGAGTGCCTGTTTCTTGGAAAAACAAAAAAGCAAGTATTAAAAGAGGTGACAACTGTTTTTGGTCCTTTCCCGAAGAATCCATTTCAATCTGGCAAATTCATTCACGACTTCCTTGAATTTGTTGGTCAAAACTCAGAATCCAACAAGTCCCTATGTGTCACTAATATGATGAAGAAACTCCTGAATTCAAGAAATTACGCTTTCTCTAGTTTCCTTGTGGGACTTCTCCAATATAACCCAAATGAACGATTGACGCCTTTTCAAGCGGCCATGCATCCATTTTTGGCTCCTGAATTCCCATTTCGTTATCTTTTGTCTCAGCAAGGTTGTGAAAGCGAAGCAGTTGCATCTAGTTACTCTGAAGTTCTGCTTCCATCTGATCAATACTTCTACAAACCTGTGAAGGTGGGCGGAATTGAATCTCTTAAGAGAGAAGACTTGTGTTGTAGACCTGAAAAGCCTTTGGAAACAACGCAATCTTTACCCATTCACATCAAGTGTAATTGCTGTCCTGAGCTAGACTTTGCTCATCATTCTGCGAAAGACTTCAAGCATGGAATGTCACAAGATGGAACGTTGTGTGAAGGAGACAACCTGAAAATTAAAAATGATGGACATATTTCAAGAACTGATGAAATGGCGAGTACTAATTTGAGTACTGTCATCCACAAAGGTGATGATACTGTTAAGTCTTTGAACTTTAAGGATCACCGAAGATGGTGTTTCAAGGAAGTCATATTGCAGGAGAATATACCGACTGTTAAAATAGGTGCCAAAATAGCACTAGAGGAACACTCAAATGTTTTGGACGACCAAACATGTTCTGCTGCAAGGATACGTGGTTACCAAAGAAAATCTATTAGCACGAAGGATGAGATAAATGATTTATCCCCGGAGTTGAAGTACAGGAAGTGTGGAGGTCCCGAAAGAGTAAAGCGACATTTCTTATCCCTGGATACTGAGTGCCCTGAAAGGAAAAAGTTGCAACTAGAATCCAACGATCCAATGCTTCACAGCAAGGAAAGAACAAGCCCATCTCATGGATATCAAGAGGATGTGGTGGTGTTGCTCTCATCCTGATTCTTGATAGCTGGTCAAATTTCTATTTATGTGGAAGGGGTCAAGAGACGGCGGTTCTTTAAGTTGTAGTTGGAAAAGTGTGCTGAAAATCGTCATTATATACGCGGGGCTACTAGGGTGTTTCCGCCGCCTTGTGACCCTGGGCCAGTGAAGCGATCATTAATGCAGCTGACGGTTCGTTCGTTAGCCCTCCGTCAGAGCGAATTGAGGGATTGTGGGTAGTGTGTGTTTATGTAGTGGGTGGACGAGCTAGGCCATTGGTGGAAAAGTATAGATATAGATACATGTCAACTGACTGTCTTAAGCTATGTTCACATTAAAGCCGAAACTTGATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9V3D5	Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Drosophila melanogaster OX=7227 GN=Dyrk2 PE=1 SV=1
P83102	Putative dual specificity tyrosine-phosphorylation-regulated kinase 3 homolog OS=Drosophila melanogaster OX=7227 GN=Dyrk3 PE=1 SV=3
Q09815	Serine/threonine-protein kinase ppk5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ppk5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR050494 all species →	Family	Serine/threonine and dual-specificity kinase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24058 all species →	DUAL SPECIFICITY PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0018107 all species →	Biological Process	peptidyl-threonine phosphorylation	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18669	DYRK2_3_4; dual specificity tyrosine-phosphorylation-regulated kinase 2/3/4	EC:2.7.12.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g7367.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

19.4Max TPM

5.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	5.66	19.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	19.43
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	13.31
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	9.00
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	7.63
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	7.34
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	7.05
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	6.95
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	6.80
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	6.64
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	6.17
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	6.08
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	6.07
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	6.06
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	5.67
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	5.63
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	5.41
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	5.36
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	5.25
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	5.23
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	5.12
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	4.84
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	4.66
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	4.56
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	4.56
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	4.53
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	4.52
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	4.44
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	4.40
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	4.39
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	4.27
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	3.74
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	3.72
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	3.47
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	3.47
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	3.36
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	2.99
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	2.95
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	2.86
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	2.81

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.