Gene detail

Detailed information of g7377.t1.1 in Haliclystus octoradiatus

Genomic Location: not available for this species
NR annotation: BAK62955.1, nuclear pore glycoprotein p62 [Pan troglodytes]
Species abbreviation HOCTO · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P37198	Nuclear pore glycoprotein p62 OS=Homo sapiens OX=9606 GN=NUP62 PE=1 SV=3
P17955	Nuclear pore glycoprotein p62 OS=Rattus norvegicus OX=10116 GN=Nup62 PE=1 SV=1
Q63850	Nuclear pore glycoprotein p62 OS=Mus musculus OX=10090 GN=Nup62 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006734 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05064 all species →	Nsp1_C	Nsp1-like C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007758 all species →	Domain	Nucleoporin, NSP1-like, C-terminal	Interproscan
IPR026010 all species →	Family	Nucleoporin NSP1/NUP62	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12084 all species →	NUCLEAR PORE GLYCOPROTEIN P62-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0044613 all species →	Cellular Component	nuclear pore central transport channel	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14306	NUP62, NSP1; nuclear pore complex protein Nup62	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.