Gene detail

Detailed information of g741.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3160786.1, unnamed protein product [Pocillopora meandrina]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P1Q0	Vacuolar protein sorting-associated protein 54 OS=Homo sapiens OX=9606 GN=VPS54 PE=1 SV=2
Q5SPW0	Vacuolar protein sorting-associated protein 54 OS=Mus musculus OX=10090 GN=Vps54 PE=1 SV=1
Q9JMK8	Vacuolar protein sorting-associated protein 54 OS=Rattus norvegicus OX=10116 GN=Vps54 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000020 (this species only)
Orthogroup (gene family)	OG0000134 (this species only)
Orthogroup (gene family)	OG0000570 (this species only)
Orthogroup (gene family)	OG0001683 (this species only)
Orthogroup (gene family)	OG0002601 (this species only)
Orthogroup (gene family)	OG0004663 (this species only)
Orthogroup (gene family)	OG0005034 (this species only)
Orthogroup (gene family)	OG0009135 (this species only)
Orthogroup (gene family)	OG0011324 (this species only)
Orthogroup (gene family)	OG0011787 (this species only)
Orthogroup (gene family)	OG0024494 (this species only)
Orthogroup (gene family)	OG0025854 (this species only)
Orthogroup (gene family)	OG0029701 (this species only)
Orthogroup (gene family)	OG0059667 (this species only)
Orthogroup (gene family)	OG0173116 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10961 all species →	SelK_SelG	Selenoprotein SelK_SelG	Family	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF05817 all species →	Ribophorin_II	Oligosaccharyltransferase subunit Ribophorin II	Family	Interproscan
PF01704 all species →	UDPGP	UTP--glucose-1-phosphate uridylyltransferase	Family	Interproscan
PF10475 all species →	Vps54_N	Vacuolar-sorting protein 54, of GARP complex	Repeat	Interproscan
PF07928 all species →	Vps54	Vps54-like protein	Family	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF02494 all species →	HYR	HYR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024491 all species →	Family	Selenoprotein SelK/SelG	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR008365 all species →	Family	Prostanoid receptor	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001879 all species →	Domain	GPCR, family 2, extracellular hormone receptor domain	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR053066 all species →	Family	Adhesion G-protein coupled receptor G7	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR003280 all species →	Family	Two pore domain potassium channel	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR008814 all species →	Family	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1	Interproscan
IPR039741 all species →	Family	UDP-sugar pyrophosphorylase	Interproscan
IPR002618 all species →	Family	UDPGP family	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR039745 all species →	Family	Vacuolar protein sorting-associated protein 54	Interproscan
IPR019515 all species →	Domain	Vacuolar protein sorting-associated protein 54, N-terminal	Interproscan
IPR012501 all species →	Domain	Vacuolar protein sorting-associated protein 54, C-terminal	Interproscan
IPR001875 all species →	Domain	Death effector domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16875 all species →	SELENOPROTEIN K	Interproscan
PTHR11866 all species →	G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER	Interproscan
PTHR47767 all species →	ADHESION G PROTEIN-COUPLED RECEPTOR G7	Interproscan
PTHR11003 all species →	POTASSIUM CHANNEL, SUBFAMILY K	Interproscan
PTHR12640 all species →	RIBOPHORIN II	Interproscan
PTHR11952 all species →	UDP- GLUCOSE PYROPHOSPHORYLASE	Interproscan
PTHR12965 all species →	VACUOLAR PROTEIN SORTING 54	Interproscan
PTHR24246 all species →	OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR	Interproscan
PTHR45615 all species →	MYOSIN HEAVY CHAIN, NON-MUSCLE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan
GO:0032469 all species →	Biological Process	endoplasmic reticulum calcium ion homeostasis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0005267 all species →	Molecular Function	potassium channel activity	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015271 all species →	Molecular Function	outward rectifier potassium channel activity	Interproscan
GO:0022841 all species →	Molecular Function	potassium ion leak channel activity	Interproscan
GO:0030322 all species →	Biological Process	stabilization of membrane potential	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0008250 all species →	Cellular Component	oligosaccharyltransferase complex	Interproscan
GO:0003977 all species →	Molecular Function	UDP-N-acetylglucosamine diphosphorylase activity	Interproscan
GO:0006048 all species →	Biological Process	UDP-N-acetylglucosamine biosynthetic process	Interproscan
GO:0070569 all species →	Molecular Function	uridylyltransferase activity	Interproscan
GO:0000938 all species →	Cellular Component	GARP complex	Interproscan
GO:0006896 all species →	Biological Process	Golgi to vacuole transport	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016460 all species →	Cellular Component	myosin II complex	Interproscan
GO:0032982 all species →	Cellular Component	myosin filament	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00972	UAP1; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase	EC:2.7.7.23 EC:2.7.7.83	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala
K17600	VPS54; vacuolar protein sorting-associated protein 54	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.