Gene detail

Detailed information of g7421.t1 in Acropora digitifera

Genomic Location: chr3Alt:30825454...30840968
NR annotation: XP_029200774.2, src substrate cortactin-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr3Alt.g7421.t1

GGGGAGTGGGCCAGGAAGTGACTCTGTTCCCTTTAATTGCCTTCAGCGTCCGCTCATCGAAATATTTTTCTTCCTCTTGCTTCAGAAAAATGTGGAAAGCAGGATACGACCCGAAAGCAATCGTAAATGATGCCGACGATGACGATTGGGAAACAGATCCAGACTTTGTAAATGATGTCTCCGAACAAGAGCAGAGATGGGGAGCAAAGACAGTGGAGGGATCTGGGCATCATGAATCTATAAGTATAAATGACTTGCGGAAAGGTGTGGCATCAGATCATGCTAAGATTAAGCAGGAGGAACAGGCGAGTGGTCCAAAAGCATCTTATGGTTATGGAGGAAAATTTGGTGTACAGAAAGACAGAATAGATAAGAATGTGGTCGGTTGGGATTATGAAGGGAAAGTTGACAAGCATGCTTCACAAAAAGACTATGCAACTGGTTTTGGTGGTAAATATGGAGTACAAAAGGACAGAGTTGATCAGGCAGCTGTTGGGTTTGAATACGAAGGCAAAACTGAAAAGCATGAATCACAAAAAGATTATTCAAAAGGATTTGGAGGGAAATATGGGGTGCAGAAAGACAGAATTGATAAGGCTGCAGTTGGCTGGGAATATGAAGGAAAAACCGATGCGCACGCATCACAAAAAGATTATTCTAAAGGTTTTGGTGGAAAATATGGTGTTCAAAAGGACAGAGTCGATAAGGCTGCGGTTGGGTTTGAATATGAAGGAAAAACAGAAGCTCATGCCTCGCAACTTGACCACTCCAAAGGATTTGGTGGCAAGTTCGGAGTGCAGAAAGACAAAATGGACAAGGCAGCAGTTGGTTATGAATATGAAGGAAAAACTGAAGCGCATGCTTCACAGAAAGATCATTCCAAAGGGTTTGGTGGAAAATTTGGAGTTCAAAAAGAGCGGGTTGACAAATCAGCTTTGGGCTTCGAGTACGAGGGCAAAACCGAAGCACACGCATCTCAGAAAGGAGGCTCCACTCACCCGATAGTGGTTTTCAGGGAGGGGAAAGTTGGTTATGAATATGAAGGAAAAACTGAAGTGCATGCTTCACAGAAAGATCATTCCAAAGGATTTGGTGGAAAATTTGGAGTTCAAAAAGAGCGGGTTGACAAATCAGCTTTGGGCTTCGAGTACGAGGGCAAAACCGAAGCACACGCATCTCAGAAAGATTATTCCAAAGGCTTTGGCGGTAGATATGGTGTTCAATCGGACAGACAAGATGCTACCGCTGGTAGTTATGACGAAATGCAAGAAGTCAAATCATCTTATCAAACTGCAAAGCCTCGGGCAGGTTCTGGTGCGGCGGGTAACTTGAAATCAAAGTTTGAAAACATGGCAAGGGAGCAAGAAGAAGAAAACAGAAAGAGAGCAGAAGAAGAGAAGGCTCGGCGACTTGCAAAAGAACAGCGGGAGAAAGAACTCAACGAGAAAAGGCACGCCGAGCAACAAGCGCGAGACCAAGAAGAAGCCGAGGAAGAAGCTCGACGCGAAGCAGAGGAACAAGCCAGACAACAACAAGCAGCTGAAGAGGAAGAAGAGCCGCAGGAACTGTATGAAGAAGCTCCTGAACCAACCAGAGAAGAAGAGCAAGAGCCAACTGATTTTTATGAAGACATTCCCACCGCTTCAGAGAGAGATGAACAACCCACCGACTTGTATGAGGAGCTGCCCACACAGGAAATCCAAGAAGGGGAACAGGGACAGGTTGAAGCAGGATATGGAATCACTGCTACTGCACTGTATGACTACCAAGCAGATGGAGAAGATGAAATCTCGTTTGATCCAGGCGACATCATCACAGATATCGAGAAAATTGACGACGGCTGGTGGATGGGTACCTGTAATGGACAGAGAGGGCTCTTCCCTTCGAATTTTGTGAAAGAAAATTAATGGCATCGCACGGCTGATTTCCCCGGAGTAGTTTTAGCTTTTTTTTTCCTGATTTTCTACAGCTTGAGAAGAATATTGGTCAGGAAAATGAAATGAAAGTTTCACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60598	Src substrate cortactin OS=Mus musculus OX=10090 GN=Cttn PE=1 SV=2
Q01406	Src substrate protein p85 OS=Gallus gallus OX=9031 GN=CTTN1 PE=1 SV=1
Q66HL2	Src substrate cortactin OS=Rattus norvegicus OX=10116 GN=Cttn PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF02218 all species →	HS1_rep	Repeat in HS1/Cortactin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR003134 all species →	Repeat	Hs1/Cortactin	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10829 all species →	CORTACTIN AND DREBRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030427 all species →	Cellular Component	site of polarized growth	Interproscan
GO:0030833 all species →	Biological Process	regulation of actin filament polymerization	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06106	CTTN, EMS1; cortactin	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.