Gene detail

Detailed information of g7455.t1 in Acropora digitifera

Genomic Location: chr3Alt:31233379...31244760
NR annotation: XP_044173149.1, cytochrome P450 3A8-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P33268	Cytochrome P450 3A8 OS=Macaca fascicularis OX=9541 GN=CYP3A8 PE=1 SV=1
P24462	Cytochrome P450 3A7 OS=Homo sapiens OX=9606 GN=CYP3A7 PE=1 SV=3
P08684	Cytochrome P450 3A4 OS=Homo sapiens OX=9606 GN=CYP3A4 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR050705 all species →	Family	Cytochrome P450 3A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24302 all species →	CYTOCHROME P450 FAMILY 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0008395 all species →	Molecular Function	steroid hydroxylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07424	CYP3A; cytochrome P450 family 3 subfamily A	EC:1.14.14.1	Cytochrome P450	ko00199	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g7455.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

24.6Max TPM

12.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	11.99	24.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	24.60
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	23.16
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	20.15
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	17.57
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	16.02
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	15.25
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	15.20
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	13.65
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	13.36
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	13.02
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	12.69
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	12.67
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	12.44
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	12.14
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	12.03
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	11.84
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	11.78
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	11.73
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	11.69
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	11.63
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	11.55
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	11.54
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	11.14
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	10.96
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	10.77
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	10.74
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	10.63
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	10.39
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	10.28
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	10.20
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	9.62
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	8.90
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	8.11
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	7.85
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	7.75
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	6.85
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	6.78
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	6.20
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	4.78

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.