Gene detail

Detailed information of g75.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBG56572.1, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Deltaproteobacteria bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0UV08	4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Histophilus somni (strain 2336) OX=228400 GN=ispH PE=3 SV=1
P57960	4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pasteurella multocida (strain Pm70) OX=272843 GN=ispH PE=3 SV=1
A5UID9	4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Haemophilus influenzae (strain PittGG) OX=374931 GN=ispH PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000142 (this species only)
Orthogroup (gene family)	OG0000349 (this species only)
Orthogroup (gene family)	OG0003298 (this species only)
Orthogroup (gene family)	OG0006216 (this species only)
Orthogroup (gene family)	OG0006488 (this species only)
Orthogroup (gene family)	OG0008651 (this species only)
Orthogroup (gene family)	OG0013888 (this species only)
Orthogroup (gene family)	OG0014658 (this species only)
Orthogroup (gene family)	OG0019887 (this species only)
Orthogroup (gene family)	OG0023243 (this species only)
Orthogroup (gene family)	OG0080336 (this species only)
Orthogroup (gene family)	OG0080362 (this species only)
Orthogroup (gene family)	OG0173156 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02401 all species →	LYTB	LytB protein	Family	Interproscan
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17857 all species →	AAA_lid_1	AAA+ lid domain	Domain	Interproscan
PF12775 all species →	AAA_7	P-loop containing dynein motor region	Domain	Interproscan
PF12781 all species →	AAA_9	ATP-binding dynein motor region	Domain	Interproscan
PF12777 all species →	MT	Microtubule-binding stalk of dynein motor	Domain	Interproscan
PF12780 all species →	AAA_8	P-loop containing dynein motor region D4	Domain	Interproscan
PF08393 all species →	DHC_N2	Dynein heavy chain, N-terminal region 2	Family	Interproscan
PF17852 all species →	Dynein_AAA_lid	Dynein heavy chain AAA lid domain	Domain	Interproscan
PF12774 all species →	AAA_6	Hydrolytic ATP binding site of dynein motor region	Domain	Interproscan
PF08190 all species →	PIH1	PIH1 N-terminal domain	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF10228 all species →	HPF1	Histone PARylation factor 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003451 all species →	Family	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR051275 all species →	Family	Cellular adhesion and signaling domain-containing protein	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR042222 all species →	Homologous_superfamily	Dynein heavy chain, domain 2, N-terminal	Interproscan
IPR043157 all species →	Homologous_superfamily	Dynein heavy chain, AAA1 domain, small subdomain	Interproscan
IPR041589 all species →	Domain	Dynein heavy chain 3, AAA+ lid domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035706 all species →	Domain	Dynein heavy chain, ATP-binding dynein motor region	Interproscan
IPR042228 all species →	Homologous_superfamily	Dynein heavy chain, linker, subdomain 3	Interproscan
IPR024743 all species →	Domain	Dynein heavy chain, coiled coil stalk	Interproscan
IPR024317 all species →	Domain	Dynein heavy chain, AAA module D4	Interproscan
IPR013602 all species →	Domain	Dynein heavy chain, linker	Interproscan
IPR041466 all species →	Domain	Dynein heavy chain, AAA 5 extension domain	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR035699 all species →	Domain	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Interproscan
IPR050734 all species →	Family	PIH1 family, Kintoun subfamily	Interproscan
IPR012981 all species →	Domain	PIH1, N-terminal	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR050127 all species →	Family	Serine Proteases (Peptidase S1 Family)	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019361 all species →	Family	Histone PARylation factor 1	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30426 all species →	4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE	Interproscan
PTHR11640 all species →	NEPHRIN	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45703 all species →	DYNEIN HEAVY CHAIN	Interproscan
PTHR22997 all species →	UNCHARACTERIZED	Interproscan
PTHR24264 all species →	TRYPSIN-RELATED	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR13386 all species →	HISTONE PARYLATION FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019288 all species →	Biological Process	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0050992 all species →	Biological Process	dimethylallyl diphosphate biosynthetic process	Interproscan
GO:0051745 all species →	Molecular Function	4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000492 all species →	Biological Process	box C/D snoRNP assembly	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0097255 all species →	Cellular Component	R2TP complex	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0010835 all species →	Biological Process	regulation of protein ADP-ribosylation	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0072572 all species →	Molecular Function	poly-ADP-D-ribose binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03527	ispH, lytB; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase	EC:1.17.7.4	Terpenoid backbone biosynthesis	ko00900	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.