Gene detail

Detailed information of g750.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_002158483.2, ras-related protein Rab-4B [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P61017	Ras-related protein Rab-4B OS=Canis lupus familiaris OX=9615 GN=RAB4B PE=2 SV=1
Q68EK7	Ras-related protein Rab-4B OS=Danio rerio OX=7955 GN=rab4b PE=2 SV=1
P61018	Ras-related protein Rab-4B OS=Homo sapiens OX=9606 GN=RAB4B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0000048 (this species only)
Orthogroup (gene family)	OG0000213 (this species only)
Orthogroup (gene family)	OG0000694 (this species only)
Orthogroup (gene family)	OG0000836 (this species only)
Orthogroup (gene family)	OG0001296 (this species only)
Orthogroup (gene family)	OG0002628 (this species only)
Orthogroup (gene family)	OG0003365 (this species only)
Orthogroup (gene family)	OG0004538 (this species only)
Orthogroup (gene family)	OG0007478 (this species only)
Orthogroup (gene family)	OG0016180 (this species only)
Orthogroup (gene family)	OG0170833 (this species only)
Orthogroup (gene family)	OG0171482 (this species only)
Orthogroup (gene family)	OG0173200 (this species only)
Orthogroup (gene family)	OG0173738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00079 all species →	Serpin	Serpin (serine protease inhibitor)	Domain	Interproscan
PF00110 all species →	wnt	wnt family	Family	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF01112 all species →	Asparaginase_2	Asparaginase	Domain	Interproscan
PF04063 all species →	DUF383	Domain of unknown function (DUF383)	Family	Interproscan
PF00625 all species →	Guanylate_kin	Guanylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR050930 all species →	Family	Major Facilitator Superfamily Vesicular Transporter	Interproscan
IPR042185 all species →	Homologous_superfamily	Serpin superfamily, domain 2	Interproscan
IPR036186 all species →	Homologous_superfamily	Serpin superfamily	Interproscan
IPR042178 all species →	Homologous_superfamily	Serpin superfamily, domain 1	Interproscan
IPR023796 all species →	Domain	Serpin domain	Interproscan
IPR000215 all species →	Family	Serpin family	Interproscan
IPR023795 all species →	Conserved_site	Serpin, conserved site	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR005817 all species →	Family	Wnt	Interproscan
IPR043158 all species →	Homologous_superfamily	Wnt, C-terminal domain	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR050209 all species →	Family	Rab GTPases family involved in membrane trafficking	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR041819 all species →	Family	Rab4	Interproscan
IPR000246 all species →	Family	Peptidase T2, asparaginase 2	Interproscan
IPR037464 all species →	Family	Threonine aspartase 1	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR035974 all species →	Homologous_superfamily	Rap/Ran-GAP superfamily	Interproscan
IPR039930 all species →	Family	Ral GTPase-activating protein subunit beta	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR039717 all species →	Family	Protein Hgh1	Interproscan
IPR007205 all species →	Domain	Protein HGH1 N-terminal	Interproscan
IPR000584 all species →	Family	Voltage-dependent calcium channel, L-type, beta subunit	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR008145 all species →	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12558 all species →	CELL DIVISION CYCLE 16,23,27	Interproscan
PTHR23506 all species →	-	Interproscan
PTHR11461 all species →	SERINE PROTEASE INHIBITOR, SERPIN	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR12027 all species →	WNT RELATED	Interproscan
PTHR47979 all species →	DRAB11-RELATED	Interproscan
PTHR10188 all species →	L-ASPARAGINASE	Interproscan
PTHR21344 all species →	UNCHARACTERIZED	Interproscan
PTHR13387 all species →	PROTEIN HGH1 HOMOLOG	Interproscan
PTHR11824 all species →	VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0045842 all species →	Biological Process	positive regulation of mitotic metaphase/anaphase transition	Interproscan
GO:0051301 all species →	Biological Process	cell division	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0004867 all species →	Molecular Function	serine-type endopeptidase inhibitor activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan
GO:0005109 all species →	Molecular Function	frizzled binding	Interproscan
GO:0005125 all species →	Molecular Function	cytokine activity	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0045165 all species →	Biological Process	cell fate commitment	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030100 all species →	Biological Process	regulation of endocytosis	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan
GO:0032482 all species →	Biological Process	Rab protein signal transduction	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0004067 all species →	Molecular Function	asparaginase activity	Interproscan
GO:0004298 all species →	Molecular Function	threonine-type endopeptidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008798 all species →	Molecular Function	beta-aspartyl-peptidase activity	Interproscan
GO:0051604 all species →	Biological Process	protein maturation	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0051056 all species →	Biological Process	regulation of small GTPase mediated signal transduction	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan
GO:0005245 all species →	Molecular Function	voltage-gated calcium channel activity	Interproscan
GO:0005891 all species →	Cellular Component	voltage-gated calcium channel complex	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04863	CACNB2; voltage-dependent calcium channel beta-2	-	Ion channels	ko04040	deepkoala
K07880	RAB4B; Ras-related protein Rab-4B	-	GTP-binding proteins	ko04031	deepkoala
K08657	TASP1; taspase, threonine aspartase, 1	EC:3.4.25.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.