Gene detail

Detailed information of g751.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3139825.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91998	Brain-specific homeobox/POU domain protein 3 OS=Gallus gallus OX=9031 GN=BRN3 PE=2 SV=1
Q12837	POU domain, class 4, transcription factor 2 OS=Homo sapiens OX=9606 GN=POU4F2 PE=1 SV=2
Q63934	POU domain, class 4, transcription factor 2 OS=Mus musculus OX=10090 GN=Pou4f2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000030 (this species only)
Orthogroup (gene family)	OG0000030 (this species only)
Orthogroup (gene family)	OG0002293 (this species only)
Orthogroup (gene family)	OG0002365 (this species only)
Orthogroup (gene family)	OG0002945 (this species only)
Orthogroup (gene family)	OG0006834 (this species only)
Orthogroup (gene family)	OG0006969 (this species only)
Orthogroup (gene family)	OG0008661 (this species only)
Orthogroup (gene family)	OG0011064 (this species only)
Orthogroup (gene family)	OG0011730 (this species only)
Orthogroup (gene family)	OG0036223 (this species only)
Orthogroup (gene family)	OG0080413 (this species only)
Orthogroup (gene family)	OG0080450 (this species only)
Orthogroup (gene family)	OG0172217 (this species only)
Orthogroup (gene family)	OG0172629 (this species only)
Transcription factor family	Homeobox · all TF in this species
Transcription factor family	Pou · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13532 all species →	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan
PF00580 all species →	UvrD-helicase	UvrD/REP helicase N-terminal domain	Domain	Interproscan
PF13361 all species →	UvrD_C	UvrD-like helicase C-terminal domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF01421 all species →	Reprolysin	Reprolysin (M12B) family zinc metalloprotease	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF14671 all species →	DSPn	Dual specificity protein phosphatase, N-terminal half	Domain	Interproscan
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF21789 all species →	TNP-like_RNaseH_C	TNP-like, RNase H C-terminal domain	Domain	Interproscan
PF21788 all species →	TNP-like_GBD	TNP-like, GTP-binding insertion domain	Domain	Interproscan
PF00086 all species →	Thyroglobulin_1	Thyroglobulin type-1 repeat	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027450 all species →	Domain	Alpha-ketoglutarate-dependent dioxygenase AlkB-like	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR032857 all species →	Family	Alpha-ketoglutarate-dependent dioxygenase alkB homologue 4	Interproscan
IPR037151 all species →	Homologous_superfamily	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014016 all species →	Domain	UvrD-like helicase, ATP-binding domain	Interproscan
IPR014017 all species →	Domain	UvrD-like DNA helicase, C-terminal	Interproscan
IPR013986 all species →	Homologous_superfamily	DExx box DNA helicase domain superfamily	Interproscan
IPR000212 all species →	Family	DNA helicase, UvrD/REP type	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR052123 all species →	Family	Non-receptor Tyrosine Phosphatase	Interproscan
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR013847 all species →	Domain	POU domain	Interproscan
IPR050255 all species →	Family	POU domain transcription factor	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR050108 all species →	Family	Cyclin-dependent kinase	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR029260 all species →	Domain	Dual specificity/tyrosine protein phosphatase, N-terminal	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR050561 all species →	Family	Protein Tyrosine Phosphatase	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan
IPR048367 all species →	Domain	Transposable element P transposase-like, RNase H, C-terminal domain	Interproscan
IPR048366 all species →	Domain	Transposable element P transposase-like, GTP-binding insertion domain	Interproscan
IPR051963 all species →	Family	Adhesion G protein-coupled receptor A	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000716 all species →	Domain	Thyroglobulin type-1	Interproscan
IPR036857 all species →	Homologous_superfamily	Thyroglobulin type-1 superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12463 all species →	OXYGENASE-RELATED	Interproscan
PTHR11070 all species →	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	Interproscan
PTHR46257 all species →	TYROSINE-PROTEIN PHOSPHATASE CORKSCREW	Interproscan
PTHR11636 all species →	POU DOMAIN	Interproscan
PTHR24056 all species →	CELL DIVISION PROTEIN KINASE	Interproscan
PTHR23339 all species →	TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47577 all species →	THAP DOMAIN-CONTAINING PROTEIN 6	Interproscan
PTHR45930 all species →	G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0032451 all species →	Molecular Function	demethylase activity	Interproscan
GO:0070988 all species →	Biological Process	demethylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0000725 all species →	Biological Process	recombinational repair	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0001784 all species →	Molecular Function	phosphotyrosine residue binding	Interproscan
GO:0004726 all species →	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0035335 all species →	Biological Process	peptidyl-tyrosine dephosphorylation	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007096 all species →	Biological Process	regulation of exit from mitosis	Interproscan
GO:0032467 all species →	Biological Process	positive regulation of cytokinesis	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan
GO:1902636 all species →	Cellular Component	kinociliary basal body	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02208	CDK8_11; cyclin-dependent kinase 8/11	EC:2.7.11.22 EC:2.7.11.23	Transcription machinery	ko03021	deepkoala
K09366	POU4F, BRN3; POU domain transcription factor, class 4	-	Transcription factors	ko03000	deepkoala
K10766	ALKBH4; DNA N6-methyl adenine demethylase	EC:1.14.11.51	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.