Gene detail

Detailed information of g7530.t1 in Montipora capitata

Genomic Location: Sc0000175:201119...214980
NR annotation: XP_029190852.2, pseudouridine-metabolizing bifunctional protein C1861.05-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g7530.t1

atgatctcacatgcccttgggcctggccctcctggtctcaagaggtacccagaggggcttattcaaataaatcctgaagtcgcagaggcacttgtgagacgaaaaccggtcattgcactagagtcaactgtcattgcccatggaatgccataccctgagaatcttagagttgctaaagatgtagagaggattgtaagagaaaatggagccacaccagccacagtggcagttattgctggaaaaatccatgtaggcttgtctgaagaaaacttggaaaaacttgcttgtggtaaaaatgctatcaagacttcccgaagagatttgccttatgtgatcagtaggagtctaagtggagcaacaacagtgtctagcacaatgatcgctgctcatgctacagggataccagtttttataactggtggtataggtggtgtacacagggatgcctcatcaacatttgatattagtgcagatctgacagagcttggaagaacaccagtagcagtagtgtgtgcaggagtaaaatctatcttggacatacaattaaccctggagtatttatccgcctacaatgtaaagtcccctgttgaggcagccaagttgataggcaagtttccgactattttcattgtcagatcaactttcactgactactctgtaatgagcaagtgtattttgctttactggttctgtgcaataagttctattaatttgttcgttgtggatgccaatttatctcttggatcaagcagtggaattgtcttggctgtgccgatacctaaggaacaatctgccgatgggcgagaaattgaaaaagcgactcagtgtgctcttcaagaagcaagagatcagggtattcaagggaaagaagtaactccttttgtgcttcaaaaagttaatgagatcactaaaggacaatcgttatatgcaaatatagcactcataaaaaacaacgctcggataggaagttcaatagcagttgaattatgcagaatacgaaaactcaaagaaactaatgctgtggtcgtgattggaggatccaatgtcgattttatcgccacggcggagaccattattcctgaggcatccaaccctggccaagtgagaatgagttttggaggcgtggggagaaaccttgcagaatgtcttgctcgtcttggattgaagcctgtgtttgtatcagcaataggaactgatccactcggagtcatgttgcttaaacacttcgaagaactcaaaatggtcacacgcggtatatatacttccaaggtgaatcaaactgctacctattcggctatattgagtcaaaatggcgactatcacgtagctgttggtgacatggatatccataaagtgattactcctgacaatattttagctttcgaagaatccatcaagcatgctccgttggtcatgttggacgcaaacctgagccaggaatccatcgatcatgcgtgcagcttttgtggagaaaaccatattccagtgtggttcgaacctacttgcattatgaaatcgcggaaaccttttctttctgaggcatggcacagcataacttatgtatcaccaaatctgaatgaactgcggtctataagcgaagtcatcacgaataagcaacaaacacctgaaaacgtccaagcgcaagagctacctctggaagatattattatccattgtttaaaactctgtaaaccattcatgcagtacattcattgcgtgatagtcacactagggaaacatggagtgctggtttgtagagacactgaagcggacacgcccttccccacgtcatgcagcttgaaggatataccgacgcgtcaacacagtttagtgtcagcgcggcattttcctgcaggaagtcaagtgaatgcaggcaattttaccggagctggagatagctttgctgcagctatggcatcctttgttatccgtggccatcctccagatttatgtgtcaaggctgggttactggcagctcattattctattcaatcacaagacgccattgcaatcacagtaaaccctgagaattttactccagaaaatgtagaagactgtatagattgtaaagctaatgacatagatattgacatctcctag

Transcript

g7530.t1

ATGATCTCACATGCCCTTGGGCCTGGCCCTCCTGGTCTCAAGAGGTACCCAGAGGGGCTTATTCAAATAAATCCTGAAGTCGCAGAGGCACTTGTGAGACGAAAACCGGTCATTGCACTAGAGTCAACTGTCATTGCCCATGGAATGCCATACCCTGAGAATCTTAGagTTGCTAAAGATGTAGAGAGGATTGTAAGAGAAAATGGAGCCACACCAGCCACAGTGGCAGTTATTGCTGGAAAAATCCATGTAGGCTTGTCTGAAGAAAACTTGGAAAAACTTGCTTGTGGTAAAAATGCTATCAAGACTTCCCGAAGAGATTTGCCTTATGTGATCAGTAGGagTCTAAGTGGAGCAACAACAGTGTCTAGCACAATGATCGCTGCTCATGCTACAGGGATACCAGTTTTTATAACTGGTGGTATAGGTGGTGTACACAGGGATGCCTCATCAACATTTGATATTAGTGCAGATCTGACAGAGCTTGGAAGAACACCAGTAGCAGTAGTGTGTGCAGGAGTAAAATCTATCTTGGACATACAATTAACCCTGGAGTATTTATCCGCCTACAATGTAAAGTCCCCTGTTGAGGCAGCCAAGTTGATAGGCAAGTTTCCGACTATTTTCATTGTCAGATCAACTTTCACTGACTACTCTGTAATGAGCAAGTGTATTTTGCTTTACTGGTTCTGTGCAATAAGTTCTATTAATTTGTTCGTTGTGGATGCCAATTTATCTCTTGGATCAAGCAGTGGAATTGTCTTGGCTGTGCCGATACCTAAGGAACAATCTGCCGATGGGCGAGAAATTGAAAAAGCGACTCAGTGTGCTCTTCAAGAAGCAAGagatcAGGGTATTCAAGGGAAAGAAGTAACTCCTTTTGTGCTTCAAAAAGTTAATGAGATCACTAAAGGACAATCGTTATATGCAAATATAGCACTCATAAAAAACAACGCTCGGATAGGAAGTTCAATAGCAGTTGAATTATGCAGAATACGaaaactcaaagaaactaatgCTGTGGTCGTGATTGGAGGATCCAATGTCGATTTTATCGCCACGGCGGAGACCATTATTCCTGAGGCATCCAACCCTGGCCAAGTGAGAATGAGTTTTGGAGGCGTGGGGAGAAACCTTGCAGAATGTCTTGCTCGTCTTGGATTGAAGCCTGTGTTTGTATCAGCAATAGGAACTGATCCACTCGGAGTCATGTTGCTTAAACACTTCGAAGAACTCAAAATGGTCACACGCGGTATATATACTTCCAAGGTGAATCAAACTGCTACCTATTCGGCTATATTGAGTCAAAATGGCGACTATCACGTAGCTGTTGGTGACATGGATATCCATAAAGTGATTACTCCTGACAATATTTTAGCTTTCGAAGAATCCATCAAGCATGCTCCGTTGGTCATGTTGGACGCAAACCTGAGCCAGGAATCCATCGATCATGCGTGCAGCTTTTGTGGAGAAAACCATATTCCAGTGTGGTTCGAACCTACTTGCATTATGAAATCGCGGAAACCTTTTCTTTCTGAGGCATGGCACAGCATAACTTATGTATCACCAAATCTGAATGAACTGCGGTCTATAAGCGAAGTCATCACGAATAAGCAACAAACACCTGAAAACGTCCAAGCGCAAGAGCTACCTCTGGAAGATATTATTATCCATTGTTTAAAACTCTGTAAACCATTCATGCAGTACATTCATTGCGTGATAGTCACACTAGGGAAACATGGAGTGCTGGTTTGTAGAGACACTGAAGCGGACACGCCCTTCCCCACGTCATGCAGCTTGAAGGATATACCGACGCGTCAACACAGTTTAGTGTCAGCGCGGCATTTTCCTGCAGGAAGTCAAGTGAATGCAGGCAATTTTACCGGAGCTGGAGATAGCTTTGCTGCAGCTATGGCATCCTTTGTTATCCGTGGCCATCCTCCAGATTTATGTGTCAAGGCTGGGTTACTGGCAGCTCATTATTCTATTCAATCACAAGACGCCATTGCAATCACAGTAAACCCTGAGAATTTTACTCCAGAAAATGTAGAAGACTGTATAGATTGTAAAGCTAATGACATAGATATTGACATCTCCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q84K35	Pseudouridine-5'-phosphate glycosidase OS=Arabidopsis thaliana OX=3702 GN=PUMY PE=1 SV=1
Q8RCT3	Pseudouridine-5'-phosphate glycosidase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=psuG PE=3 SV=1
A9BJN0	Pseudouridine-5'-phosphate glycosidase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=psuG PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004162 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04227 all species →	Indigoidine_A	Indigoidine synthase A like protein	Family	Interproscan
PF00294 all species →	PfkB	pfkB family carbohydrate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022830 all species →	Homologous_superfamily	Indigoidine synthase A-like	Interproscan
IPR007342 all species →	Family	Pseudouridine-5'-phosphate glycosidase	Interproscan
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan
IPR011611 all species →	Domain	Carbohydrate kinase PfkB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42909 all species →	ZGC:136858	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004730 all species →	Molecular Function	pseudouridylate synthase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16330	K16330; pseudouridylate synthase / pseudouridine kinase	EC:4.2.1.70 EC:2.7.1.83	Pyrimidine metabolism	ko00240	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g7530.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

68.5Max TPM

32.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	29.77	68.49
whole organisms · low pH treatment	15	15	34.54	60.93
whole organisms · extra low pH treatment pH treatment	12	12	33.15	63.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	68.49
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	56.72
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	48.91
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	47.13
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	46.30
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	45.45
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	43.56
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	39.09
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	39.04
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	36.91
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	34.78
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	22.04
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	17.51
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	17.33
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	13.47
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	13.47
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	13.33
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	7.37
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	5.52
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	4.68
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	4.13
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	60.93
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	56.60
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	54.74
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	52.03
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	51.63
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	40.81
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	38.85
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	35.77
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	35.25
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	22.15
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	20.02
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	18.84
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	11.41
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	10.03
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	9.07
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	63.39
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	55.60
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	48.01
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	46.59
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	45.31
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	33.81
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	32.32
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	18.31
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	17.64
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	12.93
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	12.64
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	11.23

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.