Gene detail

Detailed information of g764.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3106684.1, unnamed protein product [Porites lobata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5QJ74	Tubulin-specific chaperone cofactor E-like protein OS=Homo sapiens OX=9606 GN=TBCEL PE=1 SV=2
Q8C5W3	Tubulin-specific chaperone cofactor E-like protein OS=Mus musculus OX=10090 GN=Tbcel PE=1 SV=1
Q5PQJ7	Tubulin-specific chaperone cofactor E-like protein OS=Rattus norvegicus OX=10116 GN=Tbcel PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000033 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000109 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000713 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002249 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005082 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006316 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006442 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF05986 all species →	ADAMTS_spacer1	ADAM-TS Spacer 1	Domain	Interproscan
PF08686 all species →	PLAC	PLAC (protease and lacunin) domain	Domain	Interproscan
PF19236 all species →	ADAMTS_CR_3	ADAMTS cysteine-rich domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF10263 all species →	SprT-like	SprT-like family	Domain	Interproscan
PF19030 all species →	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF09587 all species →	PGA_cap	Bacterial capsule synthesis protein PGA_cap	Domain	Interproscan
PF01327 all species →	Pep_deformylase	Polypeptide deformylase	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR010909 all species →	Domain	PLAC	Interproscan
IPR010294 all species →	Domain	ADAMTS/ADAMTS-like, Spacer 1	Interproscan
IPR050439 all species →	Family	ADAMTS and ADAMTS-like	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR006640 all species →	Domain	SprT-like	Interproscan
IPR045371 all species →	Domain	ADAMTS/ADAMTS-like, cysteine-rich domain 3	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR013273 all species →	Family	ADAMTS/ADAMTS-like	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR052169 all species →	Family	Cell Wall Biosynthesis Accessory Protein	Interproscan
IPR019079 all species →	Domain	Capsule synthesis protein, CapA	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR023635 all species →	Family	Peptide deformylase	Interproscan
IPR036821 all species →	Homologous_superfamily	Peptide deformylase superfamily	Interproscan
IPR050576 all species →	Family	Ciliary and flagellar integrity-associated protein	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723 all species →	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23280 all species →	4.1 G PROTEIN	Interproscan
PTHR33393 all species →	POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED	Interproscan
PTHR10458 all species →	PEPTIDE DEFORMYLASE	Interproscan
PTHR46704 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR45973 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0042586 all species →	Molecular Function	peptide deformylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0018206 all species →	Biological Process	peptidyl-methionine modification	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01462	PDF, def; peptide deformylase	EC:3.5.1.88	Enzymes with EC numbers	-	deepkoala
K10637	MYLIP, MIR; E3 ubiquitin-protein ligase MYLIP	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala
K22449	TBCEL; tubulin-specific chaperone cofactor E-like protein	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →