Detailed information of g765.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: AAG25994.1, integrin beta chain [Podocoryna carnea]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P12606Integrin beta-1-A OS=Xenopus laevis OX=8355 GN=itgb1-a PE=2 SV=1
P12607Integrin beta-1-B OS=Xenopus laevis OX=8355 GN=itgb1-b PE=2 SV=1
P07228Integrin beta-1 OS=Gallus gallus OX=9031 GN=ITGB1 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox
Ubiquitin FamilyE2|UBC|UBC
Ubiquitin FamilyUBD|Alpha-Helix|UBA
Ubiquitin FamilyUBD|UBC-like|UBC
Ubiquitin FamilyUBD|UBC-like|UEV
Ubiquitin FamilyE2|UEV|UEV

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07782DC_STAMPDC-STAMP-like proteinFamilyInterproscan
PF12215Glyco_hydr_116Nbeta-glucosidase 2, glycosyl-hydrolase family 116 N-termFamilyInterproscan
PF14295PAN_4PAN domainDomainInterproscan
PF04685DUF608Glycosyl-hydrolase family 116, catalytic regionRepeatInterproscan
PF17205PSI_integrinIntegrin plexin domainDomainInterproscan
PF18372I-EGF_1Integrin beta epidermal growth factor like domain 1DomainInterproscan
PF08725Integrin_b_cytIntegrin beta cytoplasmic domainDomainInterproscan
PF07974EGF_2EGF-like domainDomainInterproscan
PF00362Integrin_betaIntegrin beta chain VWA domainDomainInterproscan
PF07965Integrin_B_tailIntegrin beta tail domainDomainInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00627UBAUBA/TS-N domainDomainInterproscan
PF00179UQ_conUbiquitin-conjugating enzymeDomainInterproscan
PF05920Homeobox_KNHomeobox KN domainFamilyInterproscan
PF13851GASGrowth-arrest specific micro-tubule bindingCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001452DomainSH3 domainInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR051856FamilyCell Surface Receptor and E3 Ligase ProteinInterproscan
IPR012858DomainDendritic cell-specific transmembrane protein-likeInterproscan
IPR008928Homologous_superfamilySix-hairpin glycosidase superfamilyInterproscan
IPR024462DomainGlycosyl-hydrolase family 116, N-terminalInterproscan
IPR003609DomainPAN/Apple domainInterproscan
IPR006775DomainGlycosyl-hydrolase family 116, catalytic regionInterproscan
IPR052566FamilyNon-lysosomal glucosylceramidaseInterproscan
IPR012341Homologous_superfamilySix-hairpin glycosidase-like superfamilyInterproscan
IPR033760DomainIntegrin beta N-terminalInterproscan
IPR040622DomainIntegrin beta, epidermal growth factor-like domain 1Interproscan
IPR012896DomainIntegrin beta subunit, tailInterproscan
IPR015812FamilyIntegrin beta subunitInterproscan
IPR016201DomainPSI domainInterproscan
IPR014836DomainIntegrin beta subunit, cytoplasmic domainInterproscan
IPR013111DomainEGF-like domain, extracellularInterproscan
IPR002369DomainIntegrin beta subunit, VWA domainInterproscan
IPR032695Homologous_superfamilyIntegrin domain superfamilyInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036349Homologous_superfamilyIntegrin beta tail domain superfamilyInterproscan
IPR052560FamilyRNA-directed DNA polymerase, mobile elementInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR052130FamilyAEBP2/jing C2H2-type zinc-fingerInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR017441Binding_siteProtein kinase, ATP binding siteInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR015940DomainUbiquitin-associated domainInterproscan
IPR042614DomainUbiquitin-conjugating enzyme E2-22kDa (UbcD4) , UBA domainInterproscan
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan
IPR016135Homologous_superfamilyUbiquitin-conjugating enzyme/RWD-likeInterproscan
IPR050113FamilyUbiquitin-conjugating enzymeInterproscan
IPR023313Active_siteUbiquitin-conjugating enzyme, active siteInterproscan
IPR000608DomainUbiquitin-conjugating enzyme E2Interproscan
IPR001356DomainHomeobox domainInterproscan
IPR008422DomainHomeobox KN domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR025593DomainGrowth arrest-specific protein 8 domainInterproscan
IPR039308FamilyGrowth arrest-specific protein 8Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21041DENDRITIC CELL-SPECIFIC TRANSMEMBRANE PROTEINInterproscan
PTHR12654BILE ACID BETA-GLUCOSIDASE-RELATEDInterproscan
PTHR10082INTEGRIN BETA SUBUNITInterproscan
PTHR36688ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46541ZINC FINGER PROTEIN AEBP2Interproscan
PTHR24346MAP/MICROTUBULE AFFINITY-REGULATING KINASEInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR24067UBIQUITIN-CONJUGATING ENZYME E2Interproscan
PTHR11211IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRXInterproscan
PTHR31543DYNEIN REGULATORY COMPLEX SUBUNIT 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan
GO:0008422Molecular Functionbeta-glucosidase activityInterproscan
GO:0005178Molecular Functionintegrin bindingInterproscan
GO:0005925Cellular Componentfocal adhesionInterproscan
GO:0007160Biological Processcell-matrix adhesionInterproscan
GO:0007229Biological Processintegrin-mediated signaling pathwayInterproscan
GO:0008305Cellular Componentintegrin complexInterproscan
GO:0009986Cellular Componentcell surfaceInterproscan
GO:0016477Biological Processcell migrationInterproscan
GO:0033627Biological Processcell adhesion mediated by integrinInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0035098Cellular ComponentESC/E(Z) complexInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0035556Biological Processintracellular signal transductionInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030182Biological Processneuron differentiationInterproscan
GO:0048468Biological Processcell developmentInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0031514Cellular Componentmotile ciliumInterproscan
GO:0048870Biological Processcell motilityInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0005874Cellular ComponentmicrotubuleInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0031267Molecular Functionsmall GTPase bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08802SNRK; SNF related kinaseEC:2.7.11.1
Other glycan degradationko00511deepkoala
Ubiquitin systemko04121deepkoala
Cilium and associated proteinsko03037deepkoala
Protein kinasesko01001deepkoala

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