Gene detail

Detailed information of g769.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047123860.1, structural maintenance of chromosomes protein 2-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q9C5Y4	Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis thaliana OX=3702 GN=SMC2-1 PE=2 SV=2
Q8CG48	Structural maintenance of chromosomes protein 2 OS=Mus musculus OX=10090 GN=Smc2 PE=1 SV=2
Q90988	Structural maintenance of chromosomes protein 2 OS=Gallus gallus OX=9031 GN=SMC2 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2
Transcription Factors Family	zf-BED

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02463	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan
PF06470	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan
PF05131	Pep3_Vps18	Pep3/Vps18/deep orange beta-propeller domain	Repeat	Interproscan
PF00366	Ribosomal_S17	Ribosomal protein S17	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00012	HSP70	Hsp70 protein	Family	Interproscan
PF14961	BROMI	Broad-minded protein	Family	Interproscan
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003395	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR010935	Domain	SMCs flexible hinge	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR000020	Domain	Anaphylatoxin/fibulin	Interproscan
IPR018081	Homologous_superfamily	Anaphylatoxin, complement system	Interproscan
IPR007810	Domain	Pep3/Vps18/deep orange, beta-propeller domain	Interproscan
IPR000266	Family	Small ribosomal subunit protein uS17	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR050752	Family	C2H2-type zinc-finger domain-containing protein	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR029047	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR013126	Family	Heat shock protein 70 family	Interproscan
IPR050451	Family	Heat Shock Protein 70 (HSP70)	Interproscan
IPR043129	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR029048	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR032735	Family	Protein broad-minded	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR011061	Homologous_superfamily	Hirudin/antistatin	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43977	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3	Interproscan
PTHR24384	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	Interproscan
PTHR45639	HSC70CB, ISOFORM G-RELATED	Interproscan
PTHR43313	SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0008202	Biological Process	steroid metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0004857	Molecular Function	enzyme inhibitor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09489	HSPA4; heat shock 70kDa protein 4	-	Chromosome and associated proteins	ko03036	deepkoala
K09489	HSPA4; heat shock 70kDa protein 4	-	Chaperones and folding catalysts	ko03110	deepkoala