Gene detail

Detailed information of g7690.t1.1 in Haliclystus octoradiatus

Genomic Location: not available for this species
NR annotation: XP_051054875.1, tigger transposable element-derived protein 4 [Phodopus roborovskii]
Species abbreviation HOCTO · all data for this species · gene families

Sequence

CDS

g7690.t1

atgtcaGCTCAGTTAGACTTGGAAGAAGCTAAGCCTACAAACGCACAAGTCGAAGCAGTCTCAACAGCAAACAATGATCATGCTACTGTTATCATCAAATATCTACCTGTTAATCTGGAGCCTATGGAGCATGGTGATATAGAAATGAAAGATGGTTGCAATGGCATTGAAAACGAAGAAGCAAAAGCTGATGATTCTAACGGACAGAAAAAGGTAAAAACGAGGAGAGGTGATATTTTAAATTGGGAGAAAAAGTTTAGCATTATTGCAGAAGTGGAGTCTGCTGCTAACAAATTTGGTGCCAAATCTGCTATTGCAAAGAAGTATGGGATAGCTCGCAGCACCCTCTCCACATTGTTAAGCCAAAAAGATAAAATCACATCTCTAGTTGGACAAGGAAAGAATTTTGGATTTCGTGATAAATTACCAAAATTTCCTAAAGTAGATATTGCTTTATATGAATGGTTTAAAGGAATGAAGTCAGCAGAGGGAAACAGGGAACCTACAGTTAGTGGTCATGCTTTGAAAGACAAGGCAGAACAGTTGGCAAAAACGTTCGGATATGAAAATGCACAAATATCTAAGCCATGGATTGCAAGATGGAAACACAGGCATGGCATATCTGTGAAACGCAATAGACGCAGTAGTGATATAAATGGTTCAAGCAATGAGTTTGATCTATCCGCAATCAAAGATGATGAGAAACCAGCCACTAATGTTTATTCAAAGTCAATGTTGTCATCTGCAAATATATTTACGCTGAGTGAAGTTGGAATATGTTGGAATTTAATGCCAGACCAAGCCATATCATTTAGCAATAGCAAATGCAACACATGTAAGCAACTAGAACCTTGCCTCGCTGCGTTAGTTGGAGTCAACCTTACTGGGCAGGACATTCTTCCATTATTAACAGTTGGTAAAACACAATCACCTAAATTGAGTGGCGATATAGTATCATCATATGAAACGTCTTCCAGCGGCCGGATTACCGAAGTGGTATTTCAAAGCTACTTACTTGCATTAAATGATGCTATGGTAGCTCAAAATAGATTAATAGTACTTCACGTAGATCCACATCTGGAACAATGGGGTCAAGCTACTCTATCAAACgttgaaatttgcaaattttcgTCACCTCAATCTACAGAATTGTTAAATACAAGCCAACGAGCAGCCAAGCATTTAAAAGGCATATATCGTCAACGTTTGATTAGAAAACTTTTGTGGAATGAATTAAACAGATGTAAATTCACATGCAACCTATGGGAAGCACTCACTGAATTGCAACATGCATGGTTGTTGGTTGGTGAGACATTTATCAAAGGAATTGAGTCACTAGGCTGCACTGATGCTAATGCAAAATTCAATATAGATAGCACACTTGAAAGATTTGAATCAGCCCATGCATGGGAGAGAACATGCAGTCTTTTCAAACTGCCAAGTGATTCTAAGTTCAAGGACTACATTAACGTTGATAATGATATATTGACCACTGTCCTTAGCTGTTCAAATGATGTCCAATTAccacaacaaaataataaatgtaatgagGAAACAAATGATGCAGTTACACATTACGAATCTCCTCCAATTAAAACAGTGTTAGAGGCGACAAGTACTTTACTAGATTATGTTAAAAATTATCAATCGCAACCTCACAATAGCTTAGCATTAGATGTCATTAAAGGGCTTGACGGACTTGTTGACACATTACTGAAGGACAATAAACCAGGATTACtttctATTGCATCCAAAGCAGATAGAAAACCTGTGGTTGGATTGATCGGAGGAAGCCATTTGGGTAAATTGCTTCTTCAACAAATAAGCAACACAGGTCTCATCCCTCAATCCAACATTCATGTATCGACCCGACACACTGAGTCGTTAGCTGAGTTCAGCAACAAAGGTGTCCATGtctattttgataataaacaGGTTGTTCAAAAGTGCGATATTGTATTTCTAACATGCCTTCCATCCCATCTCAACAGTGTGATAGaggtaaataaaattacaaatgatTGGTCACAAATCACAGGTGGTCATTTATCCCAGGATATAAAAGGTCATTGCAAAGGAATTATCTATTCGTTTGTCTCGTGTTGTCCAATGGGCGTGGCACTATCTGATGATTGGCTTAACGATTTATTATCTGTATTTTTGTGCTTTACGTTGAAATTAGTTGACGGTGATGTAGCCGAGGCAGAAAGGATATGTCATCATGTGATATTTGGATCCGACAAATCAATTGTAAATGATGACAAGCGATCTGCTGAAGGTGACATTAAAAggtacaaataa

Transcript

g7690.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005502 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03221 all species →	HTH_Tnp_Tc5	Tc5 transposase DNA-binding domain	Domain	Interproscan
PF03807 all species →	F420_oxidored	NADP oxidoreductase coenzyme F420-dependent	Family	Interproscan
PF03184 all species →	DDE_1	DDE superfamily endonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR006600 all species →	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR028939 all species →	Domain	Pyrroline-5-carboxylate reductase, catalytic, N-terminal	Interproscan
IPR004875 all species →	Domain	DDE superfamily endonuclease domain	Interproscan
IPR050863 all species →	Family	Centromere and Transposable Element-Derived Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19303 all species →	TRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g7690.t1.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.