Gene detail

Detailed information of g7717.t1 in Tripedalia maipoensis

Genomic Location: scaffold_4:22569667...22605889
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g7717.t1

ATGTTTCCCTTTTTTCGCAAGGGTTCTGGGAGCCAAGCGACAAGAGATAGAAATAATCTTGTTCGGGATGAACACATCAAAAAAAAGCTGAAGGTAGCATTTGCAAATGCAGTGAGAGAGGTGCAAAAGAAATACATTGGGACAGAGCATCATGACATTGAGAGGAATGATGAGTCAGCACAGAAGGTCTGTGTGGTGTTGGAAGCAATATTCCTCCATGGATACTTAGGAAAACCATCAGTGTCAGGTCTGAAAAACATCTTTTCAGAAAAACATCAAAGCCACGATGGAATTCCAGAAGTTTCGTTTTGGAGCCTGCTGAAAGACGTTACACACAAAGATGTAATTGCACAACTGAAGCACCTTATGGTTACTACCGAAGTAGGACTTTGCAGGGCTTGGATAAGGCTTGCACTGAACGACCACTTAATGGAGAGCTACTTGGATGCATTGCTAAGTGACAAGGAAAATCTTAGGTCATACTACACAACAAATGCGTTCCTGACAGATGCGGAGCTTCCCTACATTGTGCGGGACATTTTGCAAGGTGTTGCAGATCTCAATTTCAACCTTAATTATAATTCTACGAAACTAAATGCTTGGAACGCTGAGCCCCTCATTCTCTGTGGCCTACTTCCACCTGACAGAAAGAAAGCAGCCGTTGAGAAGTTAGATTCTTTGGCTAACAATTCAACGGACGAAAAAATAGGGCAGACTTTGGCTGTGAATAACCAAAGTGCCAATGAAAGTGTACATAATGAATCAGACATAAGCGACACAGGAGAGGAATCACAGTCCTCGGGGCTACGAGAAAAATTACTAGAAACCATATACCAGAACTTGGAAATCCAGAACAGCAAGCCTAGGGAAGTCAATGATAGTTCTATAGATGGAAAGGAAAATCCGGAGCCAGCCACACAAAGGTCTAGTGAGCAGAATCACTCGGACTATGACAGTGCAAGCTCCACATCGAACTCGTTACCGAAGCCATTCATCGGAAATCAAATCGGAGCAGGGGGATGGTCTGGTTGGTCGTCGGCATTTGAGCCTGCAACGACTGTCGTGGCAGCGGAGACCAGTGGACCTGATGATCAATGTCGTGAGCAGCCTGTTGCCTCCCCTGCCAATATCCTTCAAGCAAGCTTTAATGCCATATTGAAAACGTACGGCTCATCTGTACAGCCTAATCGTATGGTTTTGACTGATGTCGAAAGCACTGTCAAACCAAGTGAGAAACATGAGATCAAAGCTGACGAATCGTTGGTGCAATCCATTTCTCAAGACGAAAACCTGCGAGAGATGAATTACGAGTCTCGCTTTCAGTTCGACCATCTGCATTCCATCGCTGTTGAGAAAGGACTTGACAAGCAAAACTTTCAATGCCGTGGATGTGGGAGACCCATAGGACTCATTTATGGGCCATACCGAATATGCTTCTTCGATGGCTGGTATTACTGCGTTGAATGCCACGAGGAAGAGGAAAGTGTCATTCCAGGCAAGGTCATCCAAAGTTGGGACTTCAAACCTTTGAAAGTTTCAAAGTATAACAAAAGTTTCATCTTGAAGATTGAGGAAGAACCCCTGTTTCACATTGACGAGATCAATCCAACTTTGTACAATGCAGTACCCCTGCTGAATGAAATTAAGATGCTTAGAATTCAACTCCAACATATAAAAAGCTTCGTGTTCACCTGCCAAAATGACCTGATAGAGGACTTTCGTAGAAGAATATGGCCAAGAGAATACCTGTGCGATGATGTACATCAGTATTCACTCCTGGATCTTGTGCAAGTGAATAATGGACAGCTTGCTGTACATTTGAAGAAAGTAATATCACAGTTCAGCAAACACATATACAAGTGTTCACTGTGTAGCCAAAAGGGTTTTATATGTGAAATCTGCAACGACTCGCGAATTATTTACCCATTTGAGATTCTGACAACATTGCAGTGTCATCGTTGTCAGTCACTCTTTCACAAGGCCTGCAAGAAGGGACACCGCTGTCCAAAGTGTATCAGGCTACAATTTCGAGCAAAGAAGGAATCTGGTAGTATTCAAGACAGAATAATAGTTTCGCAGTCGAATGATTCGAATCTTGGGAACATAGGCGTGTTATAA

Transcript

g7717.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13901 all species →	RH_dom	Rubicon Homology Domain	Domain	Interproscan
PF02759 all species →	RUN	RUN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR051366 all species →	Family	Differentially Expressed in FDCP 8 Homolog	Interproscan
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR025258 all species →	Domain	Rubicon Homology Domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12326 all species →	PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for g7717.t1 in Tripedalia maipoensis.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23282	PLEKHM1; pleckstrin homology domain-containing family M member 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.