Gene detail

Detailed information of g7717.t2 in Tripedalia maipoensis

Genomic Location: scaffold_4:22569667...22605889
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g7717.t2

ATGTTTCCCTTTTTTCGCAAGGGTTCTGGGAGCCAAGCGACAAGAGATAGAAATAATCTTGTTCGGGATGAACACATCAAAAAAAAGCTGAAGGTAGCATTTGCAAATGCAGTGAGAGAGGTGCAAAAGAAATACATTGGGACAGAGCATCATGACATTGAGAGGAATGATGAGTCAGCACAGAAGGTCTGTGTGGTGTTGGAAGCAATATTCCTCCATGGATACTTAGGAAAACCATCAGTGTCAGGTCTGAAAAACATCTTTTCAGAAAAACATCAAAGCCACGATGGAATTCCAGAAGTTTCGTTTTGGAGCCTGCTGAAAGACGTTACACACAAAGATGTAATTGCACAACTGAAGCACCTTATGGTTACTACCGAAGTAGGACTTTGCAGGGCTTGGATAAGGCTTGCACTGAACGACCACTTAATGGAGAGCTACTTGGATGCATTGCTAAGTGACAAGGAAAATCTTAGGTCATACTACACAACAAATGCGTTCCTGACAGATGCGGAGCTTCCCTACATTGTGCGGGACATTTTGCAAGGTGTTGCAGATCTCAATTTCAACCTTAATTATAATTCTACGAAACTAAATGCTTGGAACGCTGAGCCCCTCATTCTCTGTGGCCTACTTCCACCTGACAGAAAGAAAGCAGCCGTTGAGAAGTTAGATTCTTTGGCTAACAATTCAACGGACGAAAAAATAGGGCAGACTTTGGCTGTGAATAACCAAAGTGCCAATGAAAGTGTACATAATGAATCAGACATAAGCGACACAGGAGAGGAATCACAGTCCTCGGGGCTACGAGAAAAATTACTAGAAACCATATACCAGAACTTGGAAATCCAGAACAGCAAGCCTAGGGAAGTCAATGATAGTTCTATAGATGGAAAGGAAAATCCGGAGCCAGCCACACAAAGGTCTAGTGAGCAGAATCACTCGGACTATGACAGTGCAAGCTCCACATCGAACTCGTTACCGAAGCCATTCATCGGAAATCAAATCGGAGCAGGGGGATGGTCTGGTTGGTCGTCGGCATTTGAGCCTGCAACGACTGTCGTGGCAGCGGAGACCAGTGGACCTGATGATCAATGTCGTGAGCAGCCTGTTGCCTCCCCTGCCAATATCCTTCAAGCAAGCTTTAATGCCATATTGAAAACGTACGGCTCATCTGTACAGCCTAATCGTATGGTTTTGACTGATGTCGAAAGCACTGTCAAACCAAGTGAGAAACATGAGATCAAAGCTGACGAATCGTTGGTGCAATCCATTTCTCAAGACGAAAACCTGCGAGAGATGAATTACGAGATTGTTTCCCCGGGATTTGACTTTTACGGATCGGACGAGTCTCGCTTTCAGTTCGACCATCTGCATTCCATCGCTGTTGAGAAAGGACTTGACAAGCAAAACTTTCAATGCCGTGGATGTGGGAGACCCATAGGACTCATTTATGGGCCATACCGAATATGCTTCTTCGATGGCTGGTATTACTGCGTTGAATGCCACGAGGAAGAGGAAAGTGTCATTCCAGGCAAGGTCATCCAAAGTTGGGACTTCAAACCTTTGAAAGTTTCAAAGTATAACAAAAGTTTCATCTTGAAGATTGAGGAAGAACCCCTGTTTCACATTGACGAGATCAATCCAACTTTGTACAATGCAGTACCCCTGCTGAATGAAATTAAGATGCTTAGAATTCAACTCCAACATATAAAAAGCTTCGTGTTCACCTGCCAAAATGACCTGATAGAGGACTTTCGTAGAAGAATATGGCCAAGAGAATACCTGTGCGATGATGTACATCAGTATTCACTCCTGGATCTTGTGCAAGTGAATAATGGACAGCTTGCTGTACATTTGAAGAAAGTAATATCACAGTTCAGCAAACACATATACAAGTGTTCACTGTGTAGCCAAAAGGGTTTTATATGTGAAATCTGCAACGACTCGCGAATTATTTACCCATTTGAGATTCTGACAACATTGCAGTGTCATCGTTGTCAGTCACTCTTTCACAAGGCCTGCAAGAAGGGACACCGCTGTCCAAAGTGTATCAGGCTACAATTTCGAGCAAAGAAGGAATCTGGTAGTATTCAAGACAGAATAATAGTTTCGCAGTCGAATGATTCGAATCTTGGGAACATAGGCGTGTTATAA

Transcript

g7717.t2

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13901 all species →	RH_dom	Rubicon Homology Domain	Domain	Interproscan
PF02759 all species →	RUN	RUN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR025258 all species →	Domain	Rubicon Homology Domain	Interproscan
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR051366 all species →	Family	Differentially Expressed in FDCP 8 Homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12326 all species →	PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for g7717.t2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23282	PLEKHM1; pleckstrin homology domain-containing family M member 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.