Gene detail

Detailed information of g772.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_001625396.1, endoplasmic reticulum chaperone BiP [Nematostella vectensis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G3I8R9	Endoplasmic reticulum chaperone BiP OS=Cricetulus griseus OX=10029 GN=HSPA5 PE=1 SV=1
P07823	Endoplasmic reticulum chaperone BiP OS=Mesocricetus auratus OX=10036 GN=HSPA5 PE=1 SV=1
P20029	Endoplasmic reticulum chaperone BiP OS=Mus musculus OX=10090 GN=Hspa5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000093 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000450 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000777 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001848 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002250 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003166 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004138 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005979 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007720 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009248 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0010535 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0061622 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00100 all species →	Zona_pellucida	Zona pellucida-like domain	Family	Interproscan
PF00743 all species →	FMO-like	Flavin-binding monooxygenase-like	Family	Interproscan
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF01124 all species →	MAPEG	MAPEG family	Family	Interproscan
PF13365 all species →	Trypsin_2	Trypsin-like peptidase domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan
PF01490 all species →	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR033305 all species →	Family	Hydrocephalus-inducing-like	Interproscan
IPR001507 all species →	Domain	Zona pellucida domain	Interproscan
IPR042235 all species →	Homologous_superfamily	Zona pellucida, ZP-C domain	Interproscan
IPR020946 all species →	Family	Flavin monooxygenase-like	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050346 all species →	Family	Flavin-containing Monooxygenases	Interproscan
IPR000960 all species →	Family	Flavin monooxygenase FMO	Interproscan
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR051345 all species →	Family	Importin beta-like nuclear transport receptors	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR001129 all species →	Family	Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein	Interproscan
IPR023352 all species →	Homologous_superfamily	Membrane associated eicosanoid/glutathione metabolism-like domain superfamily	Interproscan
IPR050997 all species →	Family	Membrane-associated proteins in eicosanoid and glutathione metabolism	Interproscan
IPR050966 all species →	Family	Glutamyl Endopeptidase	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR018181 all species →	Conserved_site	Heat shock protein 70, conserved site	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan
IPR029048 all species →	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR042050 all species →	Domain	Endoplasmic reticulum chaperone BIP, nucleotide-binding domain	Interproscan
IPR013057 all species →	Domain	Amino acid transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23053 all species →	DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1	Interproscan
PTHR11576 all species →	ZONA PELLUCIDA SPERM-BINDING PROTEIN 3	Interproscan
PTHR23023 all species →	DIMETHYLANILINE MONOOXYGENASE	Interproscan
PTHR12363 all species →	TRANSPORTIN 3 AND IMPORTIN 13	Interproscan
PTHR10250 all species →	MICROSOMAL GLUTATHIONE S-TRANSFERASE	Interproscan
PTHR20893 all species →	LD08641P	Interproscan
PTHR15462 all species →	SERINE PROTEASE	Interproscan
PTHR15722 all species →	IFT140/172-RELATED	Interproscan
PTHR16112 all species →	METHYL-CPG BINDING PROTEIN, DROSOPHILA	Interproscan
PTHR19375 all species →	HEAT SHOCK PROTEIN 70KDA	Interproscan
PTHR22950 all species →	AMINO ACID TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:1904158 all species →	Biological Process	axonemal central apparatus assembly	Interproscan
GO:0004499 all species →	Molecular Function	N,N-dimethylaniline monooxygenase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004364 all species →	Molecular Function	glutathione transferase activity	Interproscan
GO:0004602 all species →	Molecular Function	glutathione peroxidase activity	Interproscan
GO:0005635 all species →	Cellular Component	nuclear envelope	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010369 all species →	Cellular Component	chromocenter	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005788 all species →	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0034663 all species →	Cellular Component	endoplasmic reticulum chaperone complex	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0003333 all species →	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015179 all species →	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00485	FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase	EC:1.14.13.8 EC:1.8.1.-	Drug metabolism - cytochrome P450	ko00982	deepkoala
K00799	GST, gst; glutathione S-transferase	EC:2.5.1.18	Transporters	ko02000	deepkoala
K08474	TAS2R; taste receptor type 2	-	G protein-coupled receptors	ko04030	deepkoala
K09490	HSPA5, BIP; endoplasmic reticulum chaperone BiP	EC:3.6.4.10	Exosome	ko04147	deepkoala
K15436	TRPO3, MTR10; transportin-3	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →