Gene detail

Detailed information of g7773.t1 in Montipora capitata

Genomic Location: Sc0000182:389503...406927
NR annotation: XP_015756889.1, PREDICTED: fibroblast growth factor receptor 3-like [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g7773.t1

atgttcctgtctgccctagctttcattcccattagtcttgtatttctttgccaagcaagatcagagccttgtcccgttcccgagattcgtaacaagggagacaaaattgaggttgtttccattggcgaaagcaaggatgcaagacttaattgccaggttaaaaataccgagaactacaaaccaaccgtttcctggcagaaggacaataaaactctccacccagccgatcatcaacgcatgagactcaaggctaataaatacctaaagataaaaaggacaagaaaagaagacgcaggcctttatacctgtgttgcagagaatacttgtggcgggaggaacacccttactttgcggctttttgttgaaggtcctactctggatcccaaaaggaattcaacgccagctgcaccggaatttacggtaccagaagaaaagagaagaagaaatctcattgctgtacctgtgggtaacgctgttaagatggattgttcagcatctggttttcccatacccacagtcatatggtataaggacggagtcatatttcaggcaagaaagggtggctccagggtcttcataagcaagtttacaaccgtggtgaccttaaaagatgctgtaccctctgacagtgggttgtatacatgtaatgttagtaacgctcacggctggatcaaccattcctatagagttgatgtacacgaacgagtacgcgctaaaccagtcatcctagagatggaaaacgtcacggtgatggaaggcgaaaatgcgactttattgtgcaaagcgttgagtgattccatgccccatttccagtggctgcgatggttagcaccccctaccaacgcctcaggcaacatttcgaaccctcgctacgaagttataaaacaaaacgatcaagggggcaacaatcatttgttgttgccaaccggagaaaccggcaaattagtgttccatggcgttaagttaaccctggtaaatgttactaaaaaggatgaaagaaagtacacttgcattgtgggaaatgctgtcggttacactgtgaaaccagtatacattatcgtacgtgaatcgtcagaggttgaattatctcaagaaacaagcacttcagcttcgaacaacacatctcctctcacagacgtcaaccacttccaagaagttggcatttcggctgtaccgtcctcaagaaagaagatttttatcgcaatcgccgttggttttggatttttgactgttgctggtgtaggacttttacttttttgttaccgtcgcaaacttaagtcctcaaaagccacaaaatatggcatcgtttataaggcagaagcaaatgaaaccgaattgcagtacagagcgcatgatccatcattaggtgggtcttcatcttcttatggttccactgtaccgctaatacgtaatcggagtctacgctctagattaggctccaaccttactcaggtgtctgaagtggaaatgccaatggacgaaaagtgggaaattgatagagagaacatcaacatgttgggagtccttggagagggtgcttttggaagagtgatgaaagcagaaatcttaggattgccgaatatgcccttcaaatttgatgtcgctgttaagatgttaaaagaggatgccactgatcatgaattcgcagatcttgtgtcagaaatggagacaatgaagaccattgggaaacacaaaaatattatcaatctgattggagcttgcactcaaggaggtccactttatgttgttgtcgagtacgctcccaatggtaacttgaggcaattcttgagagacagaagaccaaccagagaatacactacaaccttaaccctcgcagatctggtatcatttggatatcaggtcgttaggggaatggaatatctttcttcaaagaagtgtattcatcgtgatctcgcggcaagaaacattttagtgggagaagaaaacacgctgaaaattgcagatttcggccttgcaagggacgttcatcaaatcgattactaccggaaaacaacagatggtcgtcttccagtaaagtggatggctctggaggccctctttgatcgcgtttatacaatacagagtgacgtatgggcctttggtatactcgtatgggaaatagttacgttcggcggttccccttatcctggtgttcctatagaaaatttgtttgaacttcttaaatttggttacagaatggagaaaccggtgaactgtcctgacaacatgtacgagatcatgttgagatgctggcaagattctccttcacaaagaccaacatttacggaattagttaaagagtttgatgctatgttgatgtcattatcggataaggagtatattgatctagaagcgtcgcaaatcagttctatggaaccacagacaccgacgtcttcagaggcaccatcaactcctcgacactctgttgcaactgaacacgatacagaaagtgacgatagggacaatgacaatgtatttgttgataattccaacgatatctgggaatcccgtagacacgaacttccgtaccacgtaagacaacaaaagaatgccttggatattacaagaagtctgtttcagagtgagggacaaatagaacgaaatcatgcgacacacaagtcgagtctgggtgcagatgaaagtaaaaagaaatcgtcctttgctacgttccgttctcctatacaaagcgacgtatga

Transcript

g7773.t1

ATGTTCCTGTCTGCCCTAGCTTTCATTCCCATTAGTCTTGTATTTCTTTGCCAAGCAAGATCAGAGCCTTGTCCCGTTCCCGAGATTCGTAACAAGGGAGACAAAATTGAGGTTGTTTCCATTGGCGAAAGCAAGGATGCAAGACTTAATTGCCAGGTTAAAAATACCGAGAACTACAAACCAACCGTTTCCTGGCAGAAGGACAATAAAACTCTCCACCCAGCCGATCATCAACGCATGAGACTCAAGGCTAATAAATACCTAAAGATAAAAAGGACAAGAAAAGAAGACGCAGGCCTTTATACCTGTGTTGCAGAGAATACTTGTGGCGGGAGGAACACCCTTACTTTGCGGCTTTTTGTTGAAGGTCCTACTCTGGATCCCAAAAGGAATTCAACGCCAGCTGCACCGGAATTTACGGTACCAGAAGAAAAGAGAAGAAGAAATCTCATTGCTGTACCTGTGGGTAACGCTGTTAAGATGGATTGTTCAGCATCTGGTTTTCCCATACCCACAGTCATATGGTATAAGGACGGAGTCATATTTCAGGCAAGAAAGGGTGGCTCCAGGGTCTTCATAAGCAAGTTTACAACCGTGGTGACCTTAAAAGATGCTGTACCCTCTGACAGTGGGTTGTATACATGTAATGTTAGTAACGCTCACGGCTGGATCAACCATTCCTATAGAGTTGATGTACACGAACGAGTACGCGCTAAACCAGTCATCCTAGAGATGGAAAACGTCACGGTGATGGAAGGCGAAAATGCGACTTTATTGTGCAAAGCGTTGAGTGATTCCATGCCCCATTTCCAGTGGCTGCGATGGTTAGCACCCCCTACCAACGCCTCAGGCAACATTTCGAACCCTCGCTACGAAGTTATAAAACAAAACGATCAAGGGGGCAACAATCATTTGTTGTTGCCAACCGGAGAAACCGGCAAATTAGTGTTCCATGGCGTTAAGTTAACCCTGGTAAATGTTACTAAAAAGGATGAAAGAAAGTACACTTGCATTGTGGGAAATGCTGTCGGTTACACTGTGAAACCAGTATACATTATCGTACGTGAATCGTCAGAGGTTGAATTATCTCAAGAAACAAGCACTTCAGCTTCGAACAACACATCTCCTCTCACAGACGTCAACCACTTCCAAGAAGTTGGCATTTCGGCTGTACCGTCCTCAAGAAAGAAGATTTTTATCGCAATCGCCGTTGGTTTTGGATTTTTGACTGTTGCTGGTGTAGGacttttacttttttgttaCCGTCGCAAACTTAAGTCCTCAAAAGCCACAAAATATGGCATCGTTTATAAGGCAGAAGCAAATGAAACCGAATTGCAGTACAGAGCGCATGATCCATCATTAGGTGGGTCTTCATCTTCTTATGGTTCCACTGTACCGCTAATACGTAATCGGAGTCTACGCTCTAGATTAGGCTCCAACCTTACTCAGGTGTCTGAAGTGGAAATGCCAATGGACGAAAAGTGGGAAATTGATAGAGAGAACATCAACATGTTGGGAGTCCTTGGAGAGGGTGCTTTTGGAAGAGTGATGAAAGCAGAAATCTTAGGATTGCCGAATATGCCCTTCAAATTTGATGTCGCTGTTAAGATGTTAAAAGAGGATGCCACTGATCATGAATTCGCAGATCTTGTGTCAGAAATGGAGACAATGAAGACCATTGGGAAACACAAAAATATTATCAATCTGATTGGAGCTTGCACTCAAGGAGGTCCACTTTATGTTGTTGTCGAGTACGCTCCCAATGGTAACTTGAGGCAATTCTTGAGAGACAGAAGACCAACCAGAGAATACACTACAACCTTAACCCTCGCAGATCTGGTATCATTTGGATATCAGGTCGTTAGGGGAATGGAATATCTTTCTTCAAAGAAGTGTATTCATCGTGATCTCGCGGCAAGAAACATTTTAGTGGGAGAAGAAAACACGCTGAAAATTGCAGATTTCGGCCTTGCAAGGGACGTTCATCAAATCGATTACTACCGGAAAACAACAGATgGTCGTCTTCCAGTAAAGTGGATGGCTCTGGAGGCCCTCTTTGATCGCGTTTATACAATACAGAGTGACGTATGGGCCTTTGGTATACTCGTATGGGAAATAGTTACGTTCGGCGGTTCCCCTTATCCTGGTGTTCCTATAGAAAATTTGTTTGAACTTCTTAAATTTGGTTACAGAATGGAGAAACCGGTGAACTGTCCTGACAACATGTACGAGATCATGTTGAGATGCTGGCAAGATTCTCCTTCACAAAGACCAACATTTACGGAATTAGTTAAAGAGTTTGATGCTATGTTGATGTCATTATCGGATAAGGAGTATATTGATCTAGAAGCGTCGCAAATCAGTTCTATGGAACCACAGACACCGACGTCTTCAGAGGCACCATCAACTCCTCGACACTCTGTTGCAACTGAACACGATACAGAAAGTGACGATAGGGACAATGACAATGTATTTGTTGATAATTCCAACGATATCTGGGAATCCCGTAGACACGAACTTCCGTACCACGTAAGACAACAAAAGAATGCCTTGGATATTACAAGAAGTCTGTTTCAGAGTGAGGGACAAATAGAACGAAATCATGCGACACACAAGTCGAGTCTGGGTGCAGATGAAAGTAAAAAGAAATCGTCCTTTGCTACGTTCCGTTCTCCTATACAAAGCGACGTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18460	Fibroblast growth factor receptor 3 OS=Gallus gallus OX=9031 GN=FGFR3 PE=2 SV=1
Q91287	Fibroblast growth factor receptor 3 OS=Pleurodeles waltl OX=8319 GN=FGFR3 PE=2 SV=1
P11362	Fibroblast growth factor receptor 1 OS=Homo sapiens OX=9606 GN=FGFR1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000215 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR013106 all species →	Domain	Immunoglobulin V-set domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR016248 all species →	Family	Fibroblast growth factor receptor family	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005007 all species →	Molecular Function	fibroblast growth factor receptor activity	Interproscan
GO:0008284 all species →	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0008543 all species →	Biological Process	fibroblast growth factor receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05093	FGFR2, CD332; fibroblast growth factor receptor 2	EC:2.7.10.1	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g7773.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

3Conditions

86.1Max TPM

20.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	20	24.17	86.14
whole organisms · low pH treatment	15	15	15.92	64.75
whole organisms · extra low pH treatment pH treatment	12	12	19.30	72.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	86.14
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	79.48
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	66.74
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	63.63
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	62.13
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	48.47
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	26.04
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	24.52
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	11.10
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	9.73
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	5.18
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	4.80
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	4.35
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	4.18
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	3.34
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	3.00
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.54
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	1.48
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	1.13
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.66
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	64.75
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	60.68
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	48.74
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	17.29
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	9.01
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	6.38
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	5.49
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	5.32
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	4.62
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	3.84
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	3.65
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	3.50
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	3.41
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.25
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.91
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	72.67
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	71.90
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	44.47
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	10.30
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	8.91
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	5.40
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	4.33
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	4.15
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	3.98
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.98
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	1.26
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	1.22

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.