Detailed information of g78.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: OED38771.1, deoxyribodipyrimidine photolyase [PVC group bacterium (ex Bugula neritina AB1)]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A9CJC9Deoxyribodipyrimidine photo-lyase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=phrA PE=1 SV=1
Q96524Cryptochrome-2 OS=Arabidopsis thaliana OX=3702 GN=CRY2 PE=1 SV=2
Q43125Cryptochrome-1 OS=Arabidopsis thaliana OX=3702 GN=CRY1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00005ABC_tranABC transporterDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF03441FAD_binding_7FAD binding domain of DNA photolyaseDomainInterproscan
PF00875DNA_photolyaseDNA photolyaseDomainInterproscan
PF04244DPRPDeoxyribodipyrimidine photo-lyase-related proteinFamilyInterproscan
PF01026TatD_DNaseTatD related DNaseDomainInterproscan
PF10256Erf4Golgin subfamily A member 7/ERF4 familyDomainInterproscan
PF09768Peptidase_M76Peptidase M76 familyFamilyInterproscan
PF02466Tim17Tim17/Tim22/Tim23/Pmp24 familyFamilyInterproscan
PF00118Cpn60_TCP1TCP-1/cpn60 chaperonin familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003439DomainABC transporter-like, ATP-binding domainInterproscan
IPR050107FamilyABC transporter carbohydrate import ATP-binding proteinsInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR018394Conserved_siteCryptochrome/DNA photolyase class 1, conserved site, C-terminalInterproscan
IPR036155Homologous_superfamilyCryptochrome/photolyase, N-terminal domain superfamilyInterproscan
IPR002081FamilyCryptochrome/DNA photolyase class 1Interproscan
IPR005101DomainCryptochrome/DNA photolyase, FAD-binding domainInterproscan
IPR036134Homologous_superfamilyCryptochrome/DNA photolyase, FAD-binding domain-like superfamilyInterproscan
IPR006050DomainDNA photolyase, N-terminalInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR007357FamilyPhotolyase PhrB-likeInterproscan
IPR032466Homologous_superfamilyMetal-dependent hydrolaseInterproscan
IPR001130Family3'-5' ssDNA/RNA exonuclease TatD-likeInterproscan
IPR019383DomainGolgin subfamily A member 7/ERF4Interproscan
IPR039735FamilyCysteine-rich hydrophobic domain-containing protein 1/2Interproscan
IPR019165FamilyPeptidase M76, ATP23Interproscan
IPR042861FamilyTestis-expressed protein 11Interproscan
IPR045238FamilyTim23-likeInterproscan
IPR002194Conserved_siteChaperonin TCP-1, conserved siteInterproscan
IPR017998FamilyChaperone tailless complex polypeptide 1 (TCP-1)Interproscan
IPR027413Homologous_superfamilyGroEL-like equatorial domain superfamilyInterproscan
IPR002423FamilyChaperonin Cpn60/GroEL/TCP-1 familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR43790CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATEDInterproscan
PTHR13710DNA HELICASE RECQ FAMILY MEMBERInterproscan
PTHR11455CRYPTOCHROMEInterproscan
PTHR46317HYDROLASE OF PHP SUPERFAMILY-RELATED PROTEINInterproscan
PTHR13005CYSTEINE-RICH HYDROPHOBIC DOMAIN PROTEIN BRAIN X-LINKED PROTEINInterproscan
PTHR21711MITOCHONDRIAL INNER MEMBRANE PROTEASEInterproscan
PTHR47083TESTIS-EXPRESSED PROTEIN 11Interproscan
PTHR15371TIM23Interproscan
PTHR11353CHAPERONINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005694Cellular ComponentchromosomeInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006268Biological ProcessDNA unwinding involved in DNA replicationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0009378Molecular Functionfour-way junction helicase activityInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan
GO:0043138Molecular Function3'-5' DNA helicase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003904Molecular Functiondeoxyribodipyrimidine photo-lyase activityInterproscan
GO:0032922Biological Processcircadian regulation of gene expressionInterproscan
GO:0043153Biological Processentrainment of circadian clock by photoperiodInterproscan
GO:0071949Molecular FunctionFAD bindingInterproscan
GO:0016788Molecular Functionhydrolase activity, acting on ester bondsInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0033615Biological Processmitochondrial proton-transporting ATP synthase complex assemblyInterproscan
GO:0034982Biological Processmitochondrial protein processingInterproscan
GO:0000801Cellular Componentcentral elementInterproscan
GO:0007060Biological Processmale meiosis chromosome segregationInterproscan
GO:0007130Biological Processsynaptonemal complex assemblyInterproscan
GO:0007131Biological Processreciprocal meiotic recombinationInterproscan
GO:0005744Cellular ComponentTIM23 mitochondrial import inner membrane translocase complexInterproscan
GO:0008320Molecular Functionprotein transmembrane transporter activityInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0030150Biological Processprotein import into mitochondrial matrixInterproscan
GO:0031305Cellular Componentobsolete integral component of mitochondrial inner membraneInterproscan
GO:0006457Biological Processprotein foldingInterproscan
GO:0051082Molecular Functionunfolded protein bindingInterproscan
GO:0005832Cellular Componentchaperonin-containing T-complexInterproscan
GO:0140662Molecular FunctionATP-dependent protein folding chaperoneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23537nupA; general nucleoside transport system ATP-binding protein-Enzymes with EC numbers-deepkoala
Transportersko02000deepkoala
Mitochondrial biogenesisko03029deepkoala
Transportersko02000deepkoala

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