Gene detail

Detailed information of g7819.t1 in Montipora capitata

Genomic Location: Sc0000184:89657...92461
NR annotation: XP_029185231.2, uncharacterized protein LOC114953206 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g7819.t1

atgggatgcggaacatcaaaaacattggacgttaattcggacgtgagagatactacgaagttaaaacaagttcacaacccggaagatggaggccgcggactaaaaacgtggaacgaattgtccgacgcaggacaagagaacggctgcgatgtacacctaacgaacctcgatgataagacagcgggcgacttttcccatcagtgtcaaaaatcctttgccattggagacaccgttcatgttcgaggttatgtcggagttatcaagtttgtcggcagcaccgagctgggtgaaggagattggattggaatagagatgaatcaagaacacgagcagggaaacgacggatcttatgaaggaattcagtattttctttgcggggaaaaacgaggtgtctttgcgcggccgcgaatggtgtttcaccatgagccatcacaagaaaagaaggacgttttcagctctatttcacctgcgactattgtgcttgcacaaactcgtttgcgacgtgtcctgtctaccattcgaaggcggaagctccagcttcgtaccgatgtcgacaaagctatagatgcacgcgtaaggagcattccaagaagcgaaacagaaaacgtccttaaactaagccaatacctcgccgagccattcgaagatttgaggcacagagcctttgccgtgtatcgctggataaccactaacgttttattcgatgtcgaggggtattttgagcgatcggcactgaaaggaacggacagtgaaagcgttcttcgggaacgcgtaacgtccagcgaaggctatgcaacgctttttgaggacctgtgcaaagcttgtaaagtcccagctaaaaaagtcagaggatttgccaaagggtacggttaccaaatgagacagaatattcctcaaccgaatcatacatggaatgtgattagagttaacggaggaaattggtacatctgcgacccaacttggggagctggcaacataggcgacgaaatgatgttccacagggatgctaacgtgcaccaatttatgatcccaccgtcagtggccatcactaatcgattccctgttgacgagaaatggcagctcttggatcaagcagtgaccaaagaagcgtttgagcgattagcagttccttcagggcacctatcctcaatgaatgtcacgccctgcagtcataaagagagcatgtacacagcctcagagagcgaacagatagaaatgacattttatgccaatgattacaagattttaaagggggttcttaaaagctgcgttgtggggaaagaaaaagcaacagagagaaatatggttcgggtcgagccaggtcgcggagacgtcacggtaaagctcactgcacaatttccctccgcaggtgaattttttctagatgttatgattcttgtgaactcgagatgggaacacggggtcagatactgcatttattcgacggctggagtgggtgctgcaaggggaggatttccgtcacttgggatgaatttttattccctcggatttcaacttcacaaaccacagaagaacattgaaactaaggatggaaaatgcagcatttcatttctttgtcagagaaagcgttttagttcgctcgccgtaaaactatccagaacttcaggatcaactgaagacgatgaccgcaaattgttcagcagcgagaaaactgaaaatggcttccggcttaaaattcactttcccagaaaaggtgaatacaagctaggtatttacgccaagtaccacgatcgcagcataccagatgcgtacctatgcgcataccatgtgacggccttcaaagaatgcagtcccatagcggggtttccggtgacatctgagcgcatgagaacatggggtgtgactctagcaagtcaccctgagaatatttttacggaaaatggacgatgttccataacgcttcgcaacccaaaggagattatcatatctgcgcatctcaagtcaaacgaacaagaccaccatggaatgtgctcggtagaaaatcttgatcgtgaatctacgattcttgtccatgtgccagcagctggcatcttcacgctgaatgtcttcggtcgcaaagccgtcacggatactaaatccgagtttctgtgttcctacacgatcaaagctcttaaaggcgtcagtgacaacccgggattcccacaaatttcagagcttttcaagaaatggggcctggagatggtggatcaacacgaaaacatcttgtcggaaaatggacgggcctccttgaagcttaaaaccactgggagtatactggtgcaagcgacccttcacagagacgacaccaacctaccgcatgaactgtgtttcactgaaagagaggaatctaccagcaaaattagcatgcatttgccaaccgctggaatgtacaaattgaacgtatttggccgggatggccctggcgcgaaagcgcaatttttgtgctcgttcagcatcttagcaacgtgcggattcgaggaaaatcccggatttccacgcgtgtctgacgaatttcgcgcctggggacttcgtctggaaagccatcggcagaacatcaccgtttacgatgcttcggttacggttacatttttaaatcccaacggaattgagattcttcctcgtcttacaaacgacaaggaggaaagacaagacaaacaatgcctgagaaccgagataatagatgaaagacaagtggtccaatgtcagttacctgagaaagggaaatataagttggacgtattcgggaaaaactcagcggaagctaagaaaaagacattcttgtgcagttattcaatttactattga

Transcript

g7819.t1

ATGGGATGCGGAACATCAAAAACATTGGACGTTAATTCGGACGTGAGAGATACTACGAAGTTAAAACAAGTTCACAACCCGGAAGATGGAGGCCGCGGACTAAAAACGTGGAACGAATTGTCCGACGCAGGACAAGAGAACGGCTGCGATGTACACCTAACGAACCTCGATGATAAGACAGCGGGCGACTTTTCCCATCAGTGTCAAAAATCCTTTGCCATTGGAGACACCGTTCATGTTCGAGGTTATGTCGGAGTTATCAAGTTTGTCGGCAGCACCGAGCTGGGTGAAGGAGATTGGATTGGAATAGAGATGAATCAAGAACACGAGCAGGGAAACGACGGATCTTATGAAGGAATTCAGTATTTTCTTTGCGGGGAAAAACGAGGTGTCTTTGCGCGGCCGCGAATGGTGTTTCACCATGAGCCATCACAAGAAAAGAAGGACGTTTTCAGCTCTATTTCACCTGCGACTATTGTGCTTGCACAAACTCGTTTGCGACGTGTCCTGTCTACCATTCGAAGGCGGAAGCTCCAGCTTCGTACCGATGTCGACAAAGCTATAGATGCACGCGTAAGGAGCATTCCAAGAAGCGAAACAGAAAACGTCCTTAAACTAAGCCAATACCTCGCCGAGCCATTCGAAGATTTGAGGCACAGAGCCTTTGCCGTGTATCGCTGGATAACCACTAACGTTTTATTCGATGTCGAGGGGTATTTTGAGCGATCGGCACTGAAAGGAACGGACAGTGAAAGCGTTCTTCGGGAACGCGTAACGTCCAGCGAAGGCTATGCAACGCTTTTTGAGGACCTGTGCAAAGCTTGTAAAGTCCCAGCTAAAAAAGTCAGAGGATTTGCCAAAGGGTACGGTTACCAAATGAGACAGAATATTCCTCAACCGAATCATACATGGAATGTGATTAGAGTTAACGGAGGAAATTGGTACATCTGCGACCCAACTTGGGGAGCTGGCAACATAGGCGACGAAATGATGTTCCACAGGGATGCTAACGTGCACCAATTTATGATCCCACCGTCAGTGGCCATCACTAATCGATTCCCTGTTGACGAGAAATGGCAGCTCTTGGATCAAGCAGTGACCAAAGAAGCGTTTGAGCGATTAGCAGTTCCTTCAGGGCACCTATCCTCAATGAATGTCACGCCCTGCAGTCATAAAGAGAGCATGTACACAGCCTCAGAGAGCGAACAGATAGAAATGACATTTTATGCCAATGATTACAAGATTTTAAAGGGGGTTCTTAAAAGCTGCGTTGTGGGGAAAGAAAAAGCAACAGAGAGAAATATGGTTCGGGTCGAGCCAGGTCGCGGAGACGTCACGGTAAAGCTCACTGCACAATTTCCCTCCGCAGGTGAATTTTTTCTAGATGTTATGATTCTTGTGAACTCGAGATGGGAACACGGGGTCAGATACTGCATTTATTCGACGGCTGGAGTGGGTGCTGCAAGGGGAGGATTTCCGTCACTTGGGATGAATTTTTATTCCCTCGGATTTCAACTTCACAAACCACAGAAGAACATTGAAACTAAGGATGGAAAATGCAGCATTTCATTTCTTTGTCAGAGAAAGCGTTTTAGTTCGCTCGCCGTAAAACTATCCAGAACTTCAGGATCAACTGAAGACGATGACCGCAAATTGTTCAGcagcgagaaaactgaaaatgGCTTCCGGCTTAAAATTCACTTTCCCAGAAAAGGTGAATACAAGCTAGGTATTTACGCCAAGTACCACGATCGCAGCATACCAGATGCGTACCTATGCGCATACCATGTGACGGCCTTCAAAGAATGCAGTCCCATAGCGGGGTTTCCGGTGACATCTGAGCGCATGAGAACATGGGGTGTGACTCTAGCAAGTCACCCTGAGAATATTTTTACGGAAAATGGACGATGTTCCATAACGCTTCGCAACCCAAAGGAGATTATCATATCTGCGCATCTCAAGTCAAACGAACAAGACCACCATGGAATGTGCTCGGTAGAAAATCTTGATCGTGAATCTACGATTCTTGTCCATGTGCCAGCAGCTGGCATCTTCACGCTGAATGTCTTCGGTCGCAAAGCCGTCACGGATACTAAATCCGAGTTTCTGTGTTCCTACACGATCAAAGCTCTTAAAGGCGTCAGTGACAACCCGGGATTCCCACAAATTTCAGAGCTTTTCAAGAAATGGGGCCTGGAGATGGTGGATCAACACGAAAACATCTTGTCGGAAAATGGACGGGCCTCCTTGAAGCTTAAAACCACTGGGAGTATACTGGTGCAAGCGACCCTTCACAGAGACGACACCAACCTACCGCATGAACTGTGTTTCACTGAAAGAGAGGAATCTACCAGCAAAATTAGCATGCATTTGCCAACCGCTGGAATGTACAAATTGAACGTATTTGGCCGGGATGGCCCTGGCGCGAAAGCGCAATTTTTGTGCTCGTTCAGCATCTTAGCAACGTGCGGATTCGAGGAAAATCCCGGATTTCCACGCGTGTCTGACGAATTTCGCGCCTGGGGACTTCGTCTGGAAAGCCATCGGCAGAACATCACCGTTTACGATGCTTCGGTTACGGTTACATTTTTAAATCCCAACGGAATTGAGATTCTTCCTCGTCTTACAAACGACAAGGAGGAAAGACAAGACAAACAATGCCTGAGAACCGAGATAATAGATGAAAGACAAGTGGTCCAATGTCAGTTACCTGAGAAAGGGAAATATAAGTTGGACGTATTCGGGAAAAACTCAGCGGAAGCTAAGAAAAAGACATTCTTGTGCAGTTATTCAATTTACTATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NBH2	Kyphoscoliosis peptidase OS=Homo sapiens OX=9606 GN=KY PE=1 SV=3
Q8C8H8	Kyphoscoliosis peptidase OS=Mus musculus OX=10090 GN=Ky PE=1 SV=1
E9Q309	Centrosome-associated protein 350 OS=Mus musculus OX=10090 GN=Cep350 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003155 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan
PF01841 all species →	Transglut_core	Transglutaminase-like superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR052557 all species →	Family	Cytoskeleton-associated protease/Cytokinesis protein	Interproscan
IPR002931 all species →	Domain	Transglutaminase-like	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46333 all species →	CYTOKINESIS PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24456	KY; kyphoscoliosis peptidase	EC:3.4.-.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g7819.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

16.3Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	4.09	16.27
whole organisms · low pH treatment	15	15	3.17	10.62
whole organisms · extra low pH treatment pH treatment	12	12	4.20	13.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	16.27
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	14.62
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	13.65
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	7.26
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	5.20
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	4.69
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	3.79
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	3.49
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	2.41
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	2.29
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.10
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	1.66
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	1.47
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	1.36
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	1.23
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	1.06
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.96
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.90
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.62
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.50
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.41
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	10.62
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	10.21
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	8.09
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	4.06
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	3.44
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	3.18
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	2.24
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	1.43
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.41
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	0.89
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.65
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.45
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.37
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.28
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.19
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	13.38
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	12.49
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	11.37
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	4.76
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	3.30
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	1.93
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	0.95
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.85
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.73
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.28
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.22
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.12

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.