Gene detail

Detailed information of g786.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047134717.1, cleavage and polyadenylation specificity factor subunit 6-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q6NWC6	Cleavage and polyadenylation specificity factor subunit 6 OS=Danio rerio OX=7955 GN=cpsf6 PE=2 SV=1
Q9VSH4	Cleavage and polyadenylation specificity factor subunit 6 OS=Drosophila melanogaster OX=7227 GN=Cpsf6 PE=1 SV=2
Q5ZL34	Cleavage and polyadenylation specificity factor subunit 6 OS=Gallus gallus OX=9031 GN=CPSF6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00117	GATase	Glutamine amidotransferase class-I	Domain	Interproscan
PF07045	DUF1330	Domain of unknown function (DUF1330)	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00743	FMO-like	Flavin-binding monooxygenase-like	Family	Interproscan
PF01663	Phosphodiest	Type I phosphodiesterase / nucleotide pyrophosphatase	Family	Interproscan
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan
PF02535	Zip	ZIP Zinc transporter	Family	Interproscan
PF00167	FGF	Fibroblast growth factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017926	Domain	Glutamine amidotransferase	Interproscan
IPR011008	Homologous_superfamily	Dimeric alpha-beta barrel	Interproscan
IPR044992	Family	Glutamine amidotransferase domain containing protein ChyE-like	Interproscan
IPR029062	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR010753	Domain	Domain of unknown function DUF1330	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR012258	Family	Acyl-CoA oxidase	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR034772	Family	CPSF6/7 family	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050346	Family	Flavin-containing Monooxygenases	Interproscan
IPR020946	Family	Flavin monooxygenase-like	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR000960	Family	Flavin monooxygenase FMO	Interproscan
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan
IPR002591	Family	Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase	Interproscan
IPR002017	Repeat	Spectrin repeat	Interproscan
IPR017850	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR003689	Family	Zinc/iron permease	Interproscan
IPR002209	Family	Fibroblast growth factor family	Interproscan
IPR008996	Homologous_superfamily	Cytokine IL1/FGF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42695	GLUTAMINE AMIDOTRANSFERASE YLR126C-RELATED	Interproscan
PTHR10909	ELECTRON TRANSPORT OXIDOREDUCTASE	Interproscan
PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	Interproscan
PTHR23023	DIMETHYLANILINE MONOOXYGENASE	Interproscan
PTHR10151	ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE	Interproscan
PTHR16950	ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4	Interproscan
PTHR11486	FIBROBLAST GROWTH FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003997	Molecular Function	acyl-CoA oxidase activity	Interproscan
GO:0005504	Molecular Function	fatty acid binding	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0016402	Molecular Function	pristanoyl-CoA oxidase activity	Interproscan
GO:0033540	Biological Process	fatty acid beta-oxidation using acyl-CoA oxidase	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0055088	Biological Process	lipid homeostasis	Interproscan
GO:0071949	Molecular Function	FAD binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0098789	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan
GO:0110104	Biological Process	mRNA alternative polyadenylation	Interproscan
GO:0004499	Molecular Function	N,N-dimethylaniline monooxygenase activity	Interproscan
GO:0050661	Molecular Function	NADP binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005385	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0006882	Biological Process	intracellular zinc ion homeostasis	Interproscan
GO:0071577	Biological Process	zinc ion transmembrane transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030001	Biological Process	metal ion transport	Interproscan
GO:0046873	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01951	guaA, GMPS; GMP synthase (glutamine-hydrolysing)	EC:6.3.5.2	Messenger RNA biogenesis	ko03019	deepkoala
			Drug metabolism - cytochrome P450	ko00982	deepkoala
			Peptidases and inhibitors	ko01002	deepkoala