Gene detail

Detailed information of g789.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: AAU11514.1, nanos 2 [Podocoryna carnea]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7FDB3	Nanos homolog 1 OS=Danio rerio OX=7955 GN=nanos1 PE=3 SV=1
Q80WY3	Nanos homolog 1 OS=Mus musculus OX=10090 GN=Nanos1 PE=2 SV=2
Q8WY41	Nanos homolog 1 OS=Homo sapiens OX=9606 GN=NANOS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000036 (this species only)
Orthogroup (gene family)	OG0000137 (this species only)
Orthogroup (gene family)	OG0000413 (this species only)
Orthogroup (gene family)	OG0002643 (this species only)
Orthogroup (gene family)	OG0002759 (this species only)
Orthogroup (gene family)	OG0003095 (this species only)
Orthogroup (gene family)	OG0003789 (this species only)
Orthogroup (gene family)	OG0004248 (this species only)
Orthogroup (gene family)	OG0004574 (this species only)
Orthogroup (gene family)	OG0008610 (this species only)
Orthogroup (gene family)	OG0012408 (this species only)
Orthogroup (gene family)	OG0023243 (this species only)
Orthogroup (gene family)	OG0059742 (this species only)
Orthogroup (gene family)	OG0171743 (this species only)
Orthogroup (gene family)	OG0172708 (this species only)
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF19431 all species →	MEKK4_N	MEKK4 N-terminal	Family	Interproscan
PF00538 all species →	Linker_histone	linker histone H1 and H5 family	Domain	Interproscan
PF01717 all species →	Meth_synt_2	Cobalamin-independent synthase, Catalytic domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF09758 all species →	FPL	Uncharacterised conserved protein	Family	Interproscan
PF19439 all species →	CLEC16A_C	CLEC16A C-terminal	Domain	Interproscan
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF05741 all species →	zf-nanos	Nanos RNA binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050538 all species →	Family	Mitogen-activated protein kinase kinase kinase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR045801 all species →	Domain	Mitogen-activated protein kinase kinase kinase, N-terminal	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR005818 all species →	Domain	Linker histone H1/H5, domain H15	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR005819 all species →	Family	Linker histone H1/H5	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR038071 all species →	Homologous_superfamily	UROD/MetE-like superfamily	Interproscan
IPR002629 all species →	Domain	Cobalamin-independent methionine synthase MetE, C-terminal/archaeal	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019155 all species →	Domain	CLEC16A/TT9, N-terminal	Interproscan
IPR039272 all species →	Family	CLEC16A/TT9	Interproscan
IPR045820 all species →	Domain	CLEC16A/TT9, C-terminal	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR024161 all species →	Domain	Zinc finger, nanos-type	Interproscan
IPR008705 all species →	Family	Nanos/Xcat2	Interproscan
IPR038129 all species →	Homologous_superfamily	Nanos domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48016 all species →	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	Interproscan
PTHR11467 all species →	HISTONE H1	Interproscan
PTHR30519 all species →	5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE	Interproscan
PTHR47501 all species →	TRANSPOSASE-RELATED	Interproscan
PTHR35450 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR21481 all species →	UNCHARACTERIZED	Interproscan
PTHR12887 all species →	NANOS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000165 all species →	Biological Process	MAPK cascade	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030261 all species →	Biological Process	chromosome condensation	Interproscan
GO:0031492 all species →	Molecular Function	nucleosomal DNA binding	Interproscan
GO:0045910 all species →	Biological Process	negative regulation of DNA recombination	Interproscan
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0003871 all species →	Molecular Function	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0008333 all species →	Biological Process	endosome to lysosome transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0036020 all species →	Cellular Component	endolysosome membrane	Interproscan
GO:1901096 all species →	Biological Process	regulation of autophagosome maturation	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0048477 all species →	Biological Process	oogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04428	MAP3K4, MEKK4; mitogen-activated protein kinase kinase kinase 4	EC:2.7.11.25	Protein kinases	ko01001	deepkoala
K06493	ITGB3, CD61; integrin beta 3	-	CD molecules	ko04090	deepkoala
K11275	H1_5; histone H1/5	-	Chromosome and associated proteins	ko03036	deepkoala
K15295	CPLX3_4; complexin-3/4	-	Membrane trafficking	ko04131	deepkoala
K18741	NANOS1, NOS1; protein nanos 1	-	Messenger RNA biogenesis	ko03019	deepkoala
K19513	CLEC16A; protein CLEC16A	-	Mitochondrial biogenesis	ko03029	deepkoala
K22371	G2H3; G2/M phase-specific E3 ubiquitin-protein ligase	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.