Gene detail

Detailed information of g789.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: AAU11514.1, nanos 2 [Podocoryna carnea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
E7FDB3	Nanos homolog 1 OS=Danio rerio OX=7955 GN=nanos1 PE=3 SV=1
Q80WY3	Nanos homolog 1 OS=Mus musculus OX=10090 GN=Nanos1 PE=2 SV=2
Q8WY41	Nanos homolog 1 OS=Homo sapiens OX=9606 GN=NANOS1 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF19431	MEKK4_N	MEKK4 N-terminal	Family	Interproscan
PF00538	Linker_histone	linker histone H1 and H5 family	Domain	Interproscan
PF01717	Meth_synt_2	Cobalamin-independent synthase, Catalytic domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF09758	FPL	Uncharacterised conserved protein	Family	Interproscan
PF19439	CLEC16A_C	CLEC16A C-terminal	Domain	Interproscan
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF05741	zf-nanos	Nanos RNA binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050538	Family	Mitogen-activated protein kinase kinase kinase	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR045801	Domain	Mitogen-activated protein kinase kinase kinase, N-terminal	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR005818	Domain	Linker histone H1/H5, domain H15	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR005819	Family	Linker histone H1/H5	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR038071	Homologous_superfamily	UROD/MetE-like superfamily	Interproscan
IPR002629	Domain	Cobalamin-independent methionine synthase MetE, C-terminal/archaeal	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019155	Domain	CLEC16A/TT9, N-terminal	Interproscan
IPR039272	Family	CLEC16A/TT9	Interproscan
IPR045820	Domain	CLEC16A/TT9, C-terminal	Interproscan
IPR000569	Domain	HECT domain	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR024161	Domain	Zinc finger, nanos-type	Interproscan
IPR008705	Family	Nanos/Xcat2	Interproscan
IPR038129	Homologous_superfamily	Nanos domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48016	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	Interproscan
PTHR11467	HISTONE H1	Interproscan
PTHR30519	5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE	Interproscan
PTHR47501	TRANSPOSASE-RELATED	Interproscan
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR21481	UNCHARACTERIZED	Interproscan
PTHR12887	NANOS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0000165	Biological Process	MAPK cascade	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0030261	Biological Process	chromosome condensation	Interproscan
GO:0031492	Molecular Function	nucleosomal DNA binding	Interproscan
GO:0045910	Biological Process	negative regulation of DNA recombination	Interproscan
GO:0000786	Cellular Component	nucleosome	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006334	Biological Process	nucleosome assembly	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0003871	Molecular Function	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0009086	Biological Process	methionine biosynthetic process	Interproscan
GO:0005770	Cellular Component	late endosome	Interproscan
GO:0008333	Biological Process	endosome to lysosome transport	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0036020	Cellular Component	endolysosome membrane	Interproscan
GO:1901096	Biological Process	regulation of autophagosome maturation	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0048471	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0048477	Biological Process	oogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22371	G2H3; G2/M phase-specific E3 ubiquitin-protein ligase	EC:2.3.2.26	Messenger RNA biogenesis	ko03019	deepkoala
			Protein kinases	ko01001	deepkoala
			Mitochondrial biogenesis	ko03029	deepkoala
			CD molecules	ko04090	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala
			Membrane trafficking	ko04131	deepkoala
			Ubiquitin system	ko04121	deepkoala