Gene detail

Detailed information of g79.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCH2038049.1, FAD-dependent oxidoreductase [Rickettsiales bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q48MT7	Renalase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=PSPPH_1014 PE=1 SV=1
Q888A4	Renalase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=PSPTO_1126 PE=1 SV=1
Q2FXA5	Coproporphyrinogen III oxidase OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=cgoX PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)
Orthogroup (gene family)	OG0000081 (this species only)
Orthogroup (gene family)	OG0000385 (this species only)
Orthogroup (gene family)	OG0001494 (this species only)
Orthogroup (gene family)	OG0003930 (this species only)
Orthogroup (gene family)	OG0005494 (this species only)
Orthogroup (gene family)	OG0006933 (this species only)
Orthogroup (gene family)	OG0007290 (this species only)
Orthogroup (gene family)	OG0011507 (this species only)
Orthogroup (gene family)	OG0016180 (this species only)
Orthogroup (gene family)	OG0024476 (this species only)
Orthogroup (gene family)	OG0027662 (this species only)
Orthogroup (gene family)	OG0080544 (this species only)
Orthogroup (gene family)	OG0171474 (this species only)
Orthogroup (gene family)	OG0171755 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19056 all species →	WD40_2	WD40 repeated domain	Repeat	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF14291 all species →	DUF4371	Domain of unknown function (DUF4371)	Family	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF00728 all species →	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan
PF06331 all species →	Tfb5	Transcription factor TFIIH complex subunit Tfb5	Family	Interproscan
PF14580 all species →	LRR_9	Leucine-rich repeat	Repeat	Interproscan
PF01593 all species →	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan
PF13450 all species →	NAD_binding_8	NAD(P)-binding Rossmann-like domain	Domain	Interproscan
PF04802 all species →	PP4R3	Phosphatase 4 regulatory subunit 3	Family	Interproscan
PF01607 all species →	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan
PF20231 all species →	DUF6589	Family of unknown function (DUF6589)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR039919 all species →	Family	Rho guanine nucleotide exchange factor 10/17	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR025398 all species →	Domain	Domain of unknown function DUF4371	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR038901 all species →	Family	Hexosaminidase D-like	Interproscan
IPR015883 all species →	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR035935 all species →	Homologous_superfamily	TFB5-like superfamily	Interproscan
IPR009400 all species →	Family	TFIIH subunit TTDA/Tfb5	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR002937 all species →	Domain	Amine oxidase	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR002557 all species →	Domain	Chitin binding domain	Interproscan
IPR051137 all species →	Family	Serine/threonine-protein phosphatase 4 regulatory subunit 3	Interproscan
IPR036508 all species →	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR006887 all species →	Domain	Serine/threonine-protein phosphatase 4 regulatory subunit 3-like, central domain	Interproscan
IPR046496 all species →	Domain	Domain of unknown function DUF6589	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12877 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR45749 all species →	-	Interproscan
PTHR21040 all species →	UNCHARACTERIZED	Interproscan
PTHR28580 all species →	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5	Interproscan
PTHR46545 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51	Interproscan
PTHR16128 all species →	FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN	Interproscan
PTHR23318 all species →	ATP SYNTHASE GAMMA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0051496 all species →	Biological Process	positive regulation of stress fiber assembly	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0015929 all species →	Molecular Function	hexosaminidase activity	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0000439 all species →	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006294 all species →	Biological Process	nucleotide-excision repair, preincision complex assembly	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0030289 all species →	Cellular Component	protein phosphatase 4 complex	Interproscan
GO:0072542 all species →	Molecular Function	protein phosphatase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10845	TTDA, GTF2H5, TFB5; TFIIH basal transcription factor complex TTD-A subunit	-	DNA repair and recombination proteins	ko03400	deepkoala
K14459	HEX; hexosaminidase	EC:3.2.1.52	Other glycan degradation	ko00511	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.