Detailed information of g79.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCH2038049.1, FAD-dependent oxidoreductase [Rickettsiales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q48MT7Renalase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=PSPPH_1014 PE=1 SV=1
Q888A4Renalase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=PSPTO_1126 PE=1 SV=1
Q2FXA5Coproporphyrinogen III oxidase OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=cgoX PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19056WD40_2WD40 repeated domainRepeatInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF00728Glyco_hydro_20Glycosyl hydrolase family 20, catalytic domainDomainInterproscan
PF06331Tfb5Transcription factor TFIIH complex subunit Tfb5FamilyInterproscan
PF14580LRR_9Leucine-rich repeatRepeatInterproscan
PF01593Amino_oxidaseFlavin containing amine oxidoreductaseDomainInterproscan
PF13450NAD_binding_8NAD(P)-binding Rossmann-like domainDomainInterproscan
PF04802PP4R3Phosphatase 4 regulatory subunit 3FamilyInterproscan
PF01607CBM_14Chitin binding Peritrophin-A domainDomainInterproscan
PF20231DUF6589Family of unknown function (DUF6589)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR011047Homologous_superfamilyQuinoprotein alcohol dehydrogenase-like superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR039919FamilyRho guanine nucleotide exchange factor 10/17Interproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR038901FamilyHexosaminidase D-likeInterproscan
IPR015883DomainGlycoside hydrolase family 20, catalytic domainInterproscan
IPR017853Homologous_superfamilyGlycoside hydrolase superfamilyInterproscan
IPR035935Homologous_superfamilyTFB5-like superfamilyInterproscan
IPR009400FamilyTFIIH subunit TTDA/Tfb5Interproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR002937DomainAmine oxidaseInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR002557DomainChitin binding domainInterproscan
IPR051137FamilySerine/threonine-protein phosphatase 4 regulatory subunit 3Interproscan
IPR036508Homologous_superfamilyChitin binding domain superfamilyInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR006887DomainSerine/threonine-protein phosphatase 4 regulatory subunit 3-like, central domainInterproscan
IPR046496DomainDomain of unknown function DUF6589Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12877RHO GUANINE NUCLEOTIDE EXCHANGE FACTORInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR45749-Interproscan
PTHR21040UNCHARACTERIZEDInterproscan
PTHR28580GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5Interproscan
PTHR46545LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51Interproscan
PTHR16128FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEINInterproscan
PTHR23318ATP SYNTHASE GAMMA-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0051496Biological Processpositive regulation of stress fiber assemblyInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0015929Molecular Functionhexosaminidase activityInterproscan
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0000439Cellular Componenttranscription factor TFIIH core complexInterproscan
GO:0006289Biological Processnucleotide-excision repairInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0005675Cellular Componenttranscription factor TFIIH holo complexInterproscan
GO:0006294Biological Processnucleotide-excision repair, preincision complex assemblyInterproscan
GO:0006366Biological Processtranscription by RNA polymerase IIInterproscan
GO:0070816Biological Processobsolete phosphorylation of RNA polymerase II C-terminal domainInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0008061Molecular Functionchitin bindingInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0006470Biological Processprotein dephosphorylationInterproscan
GO:0006974Biological ProcessDNA damage responseInterproscan
GO:0030289Cellular Componentprotein phosphatase 4 complexInterproscan
GO:0072542Molecular Functionprotein phosphatase activator activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10845TTDA, GTF2H5, TFB5; TFIIH basal transcription factor complex TTD-A subunit-Other glycan degradationko00511deepkoala
DNA repair and recombination proteinsko03400deepkoala

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