Detailed information of g791.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047124360.1, pre-mRNA-processing factor 17 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O60508Pre-mRNA-processing factor 17 OS=Homo sapiens OX=9606 GN=CDC40 PE=1 SV=1
Q9DC48Pre-mRNA-processing factor 17 OS=Mus musculus OX=10090 GN=Cdc40 PE=1 SV=1
O43071Pre-mRNA-processing factor 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp17 PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyULD|UFD/UBQ|UBQ_Other
Ubiquitin FamilyULD|UFD/UBQ|UBQ_PIM
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00240ubiquitinUbiquitin familyDomainInterproscan
PF04758Ribosomal_S30Ribosomal protein S30FamilyInterproscan
PF00125HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF03765CRAL_TRIO_NCRAL/TRIO, N-terminal domainDomainInterproscan
PF00650CRAL_TRIOCRAL/TRIO domainDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF04824Rad21_Rec8Conserved region of Rad21 / Rec8 like proteinFamilyInterproscan
PF06573ChurchillChurchill proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR050158FamilyUbiquitin and ubiquitin-likeInterproscan
IPR000626DomainUbiquitin-like domainInterproscan
IPR019956DomainUbiquitin domainInterproscan
IPR006846FamilySmall ribosomal subunit protein eS30Interproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR007125DomainHistone H2A/H2B/H3Interproscan
IPR000558FamilyHistone H2BInterproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR032847FamilyPre-mRNA-processing factor 17Interproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR001251DomainCRAL-TRIO lipid binding domainInterproscan
IPR036865Homologous_superfamilyCRAL-TRIO lipid binding domain superfamilyInterproscan
IPR011074DomainCRAL/TRIO, N-terminal domainInterproscan
IPR036273Homologous_superfamilyCRAL/TRIO, N-terminal domain superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR050329FamilyGLI C2H2-type zinc-fingerInterproscan
IPR006909DomainRad21/Rec8-like protein, C-terminal, eukaryoticInterproscan
IPR038543Homologous_superfamilyChurchill superfamilyInterproscan
IPR009508FamilyTranscription activator, ChurchillInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47501TRANSPOSASE-RELATEDInterproscan
PTHR10666UBIQUITINInterproscan
PTHR23428HISTONE H2BInterproscan
PTHR47664NLPC_P60 DOMAIN-CONTAINING PROTEINInterproscan
PTHR43979PRE-MRNA-PROCESSING FACTOR 17Interproscan
PTHR10174ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATEDInterproscan
PTHR19818ZINC FINGER PROTEIN ZIC AND GLIInterproscan
PTHR31931PROTEIN CHURCHILLInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0019941Biological Processmodification-dependent protein catabolic processInterproscan
GO:0031386Molecular Functionprotein tag activityInterproscan
GO:0031625Molecular Functionubiquitin protein ligase bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:1902936Molecular Functionphosphatidylinositol bisphosphate bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007275Biological Processmulticellular organism developmentInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0008543Biological Processfibroblast growth factor receptor signaling pathwayInterproscan
GO:0045893Biological Processpositive regulation of DNA-templated transcriptionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11252H2B; histone H2B-Spliceosomeko03041deepkoala
Exosomeko04147deepkoala

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